D. rerio Gene: opn7d - ENSDARG00000068124 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068124
Nameopn7d
Descriptionopsin 7, group member d [Source:ZFIN;Acc:ZDB-GENE-081105-91]
OrganismDanio rerio (zebrafish)
Synonym(s)novopsin-6, si:ch211-37p17.5
Orthologs(s)2 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.06
  • 74.06
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.92
  • 71.92
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
9.44e3
  • 9.44e3
  • 1.08e4
68.38
  • 68.38
  • 63.87
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.01e4
  • 1.01e4
66.33
  • 66.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.01e4
  • 1.01e4
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.09e4
  • 1.09e4
63.40
  • 63.40
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.49
  • 59.49
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.98
  • 58.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.42
  • 56.42
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.63
  • 55.63
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.59
  • 38.59
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.87
  • 36.87
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.97e4
  • 1.97e4
  • 2.13e4
  • 2.19e4
33.91
  • 33.91
  • 28.51
  • 26.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
  • 2.16e4
33.21
  • 33.21
  • 27.83
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.81
  • 32.81
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.38
  • 31.38
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.32
  • 30.32
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.13e4
  • 2.13e4
  • 2.19e4
28.77
  • 28.77
  • 26.62
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000068124.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Euteleostomi2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000068124.

Cross-references

EnsemblENSDARG00000068124 (opn7d)
ZFINZDB-GENE-081105-91 (opn7d)
EMBLBX957316
Uniprot/SPTREMBLE9QFB2, E9QFB2_DANRE, F1QAS9, F1QAS9_DANRE

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