D. rerio Gene: arrdc1a - ENSDARG00000068148 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068148
Namearrdc1a
Descriptionarrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
OrganismDanio rerio (zebrafish)
Synonym(s)arrdc1, sb:cb786, si:rp71-1o1.5, wu:fc25g09, wu:fi04h05, zgc:92248
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
714
  • 714
97.61
  • 97.61
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
728
  • 728
97.57
  • 97.57
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
766
  • 766
  • 1.91e3
  • 2.48e3
  • 4.49e3
  • 7.08e3
97.44
  • 97.44
  • 93.59
  • 91.70
  • 84.96
  • 76.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.09e3
  • 1.09e3
96.36
  • 96.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.93
  • 92.93
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
2.17e3
  • 2.17e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 7.47e3
  • 7.57e3
  • 9.00e3
  • 9.20e3
  • 9.87e3
  • 1.04e4
  • 1.13e4
  • 1.14e4
  • 1.16e4
  • 1.18e4
  • 1.19e4
  • 1.20e4
  • 1.22e4
  • 1.37e4
  • 1.41e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
92.73
  • 92.73
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 74.99
  • 74.66
  • 69.87
  • 69.19
  • 66.96
  • 65.34
  • 62.07
  • 61.74
  • 61.22
  • 60.36
  • 60.24
  • 59.97
  • 59.14
  • 54.18
  • 52.86
  • 50.68
  • 50.20
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.40e3
  • 2.40e3
  • 6.80e3
91.97
  • 91.97
  • 77.25
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.16e3
  • 3.16e3
89.42
  • 89.42
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.27e3
  • 5.27e3
82.36
  • 82.36
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
82.33
  • 82.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
5.29e3
  • 5.29e3
  • 6.81e3
  • 6.98e3
  • 7.28e3
  • 7.97e3
  • 9.42e3
82.30
  • 82.30
  • 77.20
  • 76.61
  • 75.62
  • 73.32
  • 68.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.59
  • 80.59
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.38e3
  • 6.38e3
  • 1.71e4
78.64
  • 78.64
  • 42.69
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.28
  • 74.28
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.10e3
  • 9.10e3
69.51
  • 69.51
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
9.23e3
  • 9.23e3
  • 9.55e3
  • 9.57e3
  • 9.70e3
  • 1.04e4
  • 1.11e4
  • 1.15e4
  • 1.18e4
  • 1.19e4
  • 1.41e4
69.10
  • 69.10
  • 68.03
  • 67.97
  • 67.51
  • 65.17
  • 62.83
  • 61.52
  • 60.46
  • 60.15
  • 52.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.30e3
  • 9.30e3
68.85
  • 68.85
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.41e3
  • 9.41e3
  • 9.46e3
  • 9.89e3
68.49
  • 68.49
  • 68.34
  • 66.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.32
  • 66.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.50
  • 65.50
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.87
  • 60.87
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
  • 2.21e4
60.55
  • 60.55
  • 25.99
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.73
  • 59.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.48e4
  • 2.01e4
59.59
  • 59.59
  • 50.55
  • 32.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.25e4
  • 1.25e4
58.01
  • 58.01
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 1.38e4
  • 1.39e4
  • 1.39e4
  • 1.50e4
56.23
  • 56.23
  • 53.83
  • 53.55
  • 53.55
  • 49.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.32e4
  • 1.32e4
  • 1.32e4
  • 1.40e4
  • 1.41e4
55.86
  • 55.86
  • 55.86
  • 53.10
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.41e4
  • 1.41e4
52.89
  • 52.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.46e4
  • 1.46e4
51.20
  • 51.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000068148.

Cross-references

EnsemblENSDARG00000068148 (arrdc1a)
ZFINZDB-GENE-030925-15 (arrdc1a)
EMBLAL831768, BC081631, BC152620
Uniprot/SPTREMBLQ6ZM71, Q6ZM71_DANRE

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