D. rerio Gene: spg7 - ENSDARG00000068187 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068187
Namespg7
Descriptionspastic paraplegia 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5391]
OrganismDanio rerio (zebrafish)
Synonym(s)fd15f08, wu:fd15f08
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.75e3
  • 2.75e3
90.79
  • 90.79
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
  • 3.82e3
88.32
  • 88.32
  • 87.23
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
88.01
  • 88.01
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
4.31e3
  • 4.31e3
  • 7.80e3
  • 7.85e3
  • 8.14e3
  • 8.41e3
  • 9.73e3
  • 1.03e4
  • 1.06e4
  • 1.06e4
  • 1.17e4
85.57
  • 85.57
  • 73.89
  • 73.71
  • 72.74
  • 71.83
  • 67.44
  • 65.58
  • 64.60
  • 64.40
  • 60.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.41e3
  • 4.41e3
  • 8.56e3
85.22
  • 85.22
  • 71.35
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
  • 6.03e3
84.27
  • 84.27
  • 79.81
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.83
  • 83.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.83
  • 83.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.66
  • 83.66
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.31
  • 83.31
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
81.88
  • 81.88
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.68
  • 81.68
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.66e3
  • 5.66e3
81.06
  • 81.06
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
5.96e3
  • 5.96e3
  • 6.63e3
  • 9.53e3
  • 9.72e3
  • 9.92e3
80.03
  • 80.03
  • 77.79
  • 68.08
  • 67.46
  • 66.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.99e3
  • 5.99e3
79.96
  • 79.96
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.13e3
  • 6.13e3
79.49
  • 79.49
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.18
  • 79.18
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.25e3
  • 6.25e3
79.09
  • 79.09
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.28e3
  • 6.28e3
78.97
  • 78.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
6.57e3
  • 6.57e3
  • 8.80e3
  • 9.13e3
78.00
  • 78.00
  • 70.54
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.43
  • 77.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.09e3
  • 7.09e3
76.25
  • 76.25
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
7.15e3
  • 7.15e3
  • 8.20e3
  • 8.40e3
  • 8.90e3
76.06
  • 76.06
  • 72.54
  • 71.87
  • 70.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
75.24
  • 75.24
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.51e3
  • 7.51e3
74.87
  • 74.87
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.94e3
  • 7.94e3
  • 8.55e3
73.42
  • 73.42
  • 71.37
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.56e3
  • 8.56e3
71.35
  • 71.35
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.74e3
  • 8.74e3
70.75
  • 70.75
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
8.86e3
  • 8.86e3
  • 9.95e3
  • 1.02e4
  • 1.02e4
  • 1.05e4
  • 1.06e4
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.12e4
  • 1.13e4
  • 1.15e4
  • 1.16e4
  • 1.18e4
70.33
  • 70.33
  • 66.70
  • 65.92
  • 65.86
  • 64.96
  • 64.50
  • 63.32
  • 62.51
  • 62.46
  • 62.35
  • 62.18
  • 61.45
  • 61.20
  • 60.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.37e3
  • 9.37e3
68.62
  • 68.62
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.77e3
  • 9.77e3
67.29
  • 67.29
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
9.85e3
  • 9.85e3
  • 9.95e3
  • 1.12e4
  • 1.30e4
  • 1.35e4
67.00
  • 67.00
  • 66.68
  • 62.64
  • 56.32
  • 54.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.06e4
  • 1.06e4
64.39
  • 64.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000068187.

Cross-references

EnsemblENSDARG00000068187 (spg7)
ZFINZDB-GENE-030131-5391 (spg7)
EMBLAL954648, BX470191
Uniprot/SPTREMBLE7F2S4, E7F2S4_DANRE

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