D. rerio Gene: cdh15 - ENSDARG00000068191 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068191
Namecdh15
Descriptioncadherin 15, type 1, M-cadherin (myotubule) [Source:ZFIN;Acc:ZDB-GENE-030131-780]
OrganismDanio rerio (zebrafish)
Synonym(s)fb48f12, wu:fb48f12
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.83e3
  • 3.83e3
87.19
  • 87.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.52
  • 85.52
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
6.20e3
  • 6.20e3
  • 6.49e3
  • 6.67e3
  • 8.25e3
  • 1.10e4
  • 1.19e4
  • 1.27e4
  • 1.28e4
  • 1.70e4
  • 1.75e4
79.24
  • 79.24
  • 78.28
  • 77.67
  • 72.38
  • 63.09
  • 60.14
  • 57.60
  • 57.17
  • 42.96
  • 41.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
76.66
  • 76.66
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
7.97e3
  • 7.97e3
  • 8.40e3
  • 1.07e4
  • 1.10e4
73.32
  • 73.32
  • 71.86
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.78e3
  • 8.78e3
70.62
  • 70.62
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.13e3
  • 9.13e3
  • 1.20e4
  • 1.25e4
69.43
  • 69.43
  • 59.98
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
9.34e3
  • 9.34e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 1.49e4
66.66
  • 66.66
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
1.03e4
  • 1.03e4
  • 1.04e4
  • 1.29e4
  • 1.33e4
  • 1.35e4
  • 1.37e4
  • 1.41e4
  • 1.42e4
  • 1.43e4
  • 1.44e4
  • 1.44e4
  • 1.48e4
  • 1.49e4
  • 1.54e4
  • 1.63e4
65.61
  • 65.61
  • 65.14
  • 56.84
  • 55.33
  • 54.77
  • 54.20
  • 52.81
  • 52.54
  • 52.27
  • 51.93
  • 51.88
  • 50.36
  • 50.18
  • 48.47
  • 45.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
1.08e4
  • 1.08e4
  • 1.37e4
  • 1.66e4
63.76
  • 63.76
  • 54.13
  • 44.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.05
  • 62.05
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 2.49e4
56.16
  • 56.16
  • 16.74
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.39e4
  • 1.39e4
  • 1.43e4
  • 1.61e4
53.58
  • 53.58
  • 52.11
  • 46.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
  • 2.22e4
50.25
  • 50.25
  • 25.57
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.67
  • 44.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.63
  • 41.63
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.26
  • 39.26
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.23
  • 37.23
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.87
  • 34.87
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.45e4
  • 2.45e4
18.10
  • 18.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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