D. rerio Gene: trim110 - ENSDARG00000068240 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068240
Nametrim110
Descriptiontripartite motif containing 110 [Source:ZFIN;Acc:ZDB-GENE-070912-10]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-10e2.3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.89e3
  • 6.89e3
  • 1.22e4
76.94
  • 76.94
  • 59.21
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.85e3
  • 8.85e3
70.37
  • 70.37
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.14e3
  • 9.14e3
69.40
  • 69.40
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.40
  • 64.40
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
1.39e4
  • 1.39e4
  • 1.47e4
  • 1.66e4
  • 1.67e4
  • 2.28e4
53.46
  • 53.46
  • 50.71
  • 44.28
  • 44.00
  • 23.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.45e4
  • 1.45e4
  • 1.91e4
51.42
  • 51.42
  • 36.08
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.52e4
  • 1.52e4
49.23
  • 49.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.54e4
  • 1.54e4
  • 1.88e4
48.55
  • 48.55
  • 36.97
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.54e4
  • 1.54e4
48.50
  • 48.50
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.48
  • 47.48
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.32
  • 47.32
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.59e4
  • 1.59e4
  • 1.66e4
46.70
  • 46.70
  • 44.33
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.31
  • 44.31
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.12
  • 40.12
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.57
  • 34.57
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.56
  • 30.56
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.05
  • 29.05
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.53
  • 25.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000068240 (trim110)
ZFINZDB-GENE-070912-10 (trim110)
Uniprot/SPTREMBLF1QK39, F1QK39_DANRE, F1QTX9, F1QTX9_DANRE, F1R7Y3, F1R7Y3_DANRE

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