D. rerio Gene: lmx1bb - ENSDARG00000068365 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068365
Namelmx1bb
DescriptionLIM homeobox transcription factor 1, beta b [Source:ZFIN;Acc:ZDB-GENE-050114-2]
OrganismDanio rerio (zebrafish)
Synonym(s)alo, lmx1b, lmx1b.1, lmx1b.1 {eco:0000313|embl:aai62932.1,gn eco:0000313|zfin:zdb-gene-050114-2}
Orthologs(s)14 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.38e3
  • 1.38e3
  • 1.24e4
  • 1.37e4
  • 1.39e4
95.40
  • 95.40
  • 58.33
  • 54.15
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
84.64
  • 84.64
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
4.78e3
  • 4.78e3
  • 7.41e3
  • 7.71e3
  • 8.31e3
  • 1.16e4
84.01
  • 84.01
  • 75.18
  • 74.19
  • 72.18
  • 61.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004017periocular mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 1.49e4
  • 1.49e4
83.34
  • 83.34
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.17e3
  • 6.17e3
  • 1.07e4
79.36
  • 79.36
  • 64.18
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.03e3
  • 7.03e3
76.47
  • 76.47
AEIR
  • AEIR
ZFA:0005491optic furrow (Danio)
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
  • 1.97e4
69.45
  • 69.45
  • 34.08
AEIR
  • AEIR
  • AEIR
CL:0000850serotonergic neuron
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 1.09e4
  • 1.16e4
  • 1.18e4
  • 1.33e4
  • 1.36e4
  • 1.41e4
  • 1.49e4
66.67
  • 66.67
  • 63.63
  • 61.09
  • 60.39
  • 55.53
  • 54.52
  • 52.92
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007046midbrain hindbrain boundary neural rod
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.28e4
  • 1.35e4
64.28
  • 64.28
  • 57.14
  • 54.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.13
  • 62.13
AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000036Larval:Day 4
1.17e4
  • 1.17e4
  • 1.20e4
  • 1.30e4
  • 1.34e4
  • 1.39e4
  • 1.42e4
  • 1.49e4
  • 1.49e4
60.68
  • 60.68
  • 59.98
  • 56.49
  • 54.97
  • 53.55
  • 52.60
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
1.19e4
  • 1.19e4
  • 1.20e4
  • 1.39e4
60.00
  • 60.00
  • 59.98
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.23e4
  • 1.23e4
58.72
  • 58.72
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
1.24e4
  • 1.24e4
  • 1.37e4
58.32
  • 58.32
  • 54.15
AEIR
  • AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
1.28e4
  • 1.28e4
  • 1.33e4
57.13
  • 57.13
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.31e4
  • 1.49e4
  • 1.49e4
57.12
  • 57.12
  • 56.23
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.36e4
57.11
  • 57.11
  • 54.52
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.31e4
  • 1.31e4
  • 1.64e4
56.07
  • 56.07
  • 45.05
AEIR
  • AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.38e4
54.99
  • 54.99
  • 53.83
AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000025Segmentation:10-13 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.88
  • 53.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.75
  • 53.75
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000034Hatching:Pec-fin
  • UBERON:0000068embryo stage
1.49e4
  • 1.49e4
  • 1.50e4
50.00
  • 50.00
  • 49.91
AEIR
  • AEIR
  • AEIR
UBERON:0002043dorsal raphe nucleus
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002289midbrain cerebral aqueduct
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002531paired fin bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003301roof plate of diencephalon
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005492hyaloid vessel
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000440superior raphe nucleus
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002148locus ceruleus
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009848zona limitans intrathalamica
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2002215otic vesicle protrusion
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:2007045midbrain hindbrain boundary neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.49
  • 47.49
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.60
  • 45.60
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.25
  • 44.25
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.86
  • 40.86
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.14
  • 40.14
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.79
  • 37.79
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.15
  • 30.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000068365.

Cross-references

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