D. rerio Gene: ttc9b - ENSDARG00000068421 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068421
Namettc9b
Descriptiontetratricopeptide repeat domain 9B [Source:ZFIN;Acc:ZDB-GENE-050419-67]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-160d20.4, si:ch211-160d20.4 {eco:0000313|embl:aai27586.1,gn eco:0000313|zfin:zdb-gene-050419-67}, zgc:158330

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
8.39e3
  • 8.39e3
  • 1.34e4
  • 1.36e4
  • 1.82e4
  • 1.92e4
71.90
  • 71.90
  • 55.04
  • 54.62
  • 39.14
  • 35.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.97e3
  • 8.97e3
69.98
  • 69.98
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.34e3
  • 9.34e3
68.72
  • 68.72
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.17
  • 48.17
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.60e4
  • 1.60e4
  • 1.63e4
46.40
  • 46.40
  • 45.26
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.60e4
  • 1.60e4
46.36
  • 46.36
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.48
  • 36.48
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.37
  • 33.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC127585, BX248121
EnsemblENSDARG00000068421 (ttc9b)
Uniprot/SPTREMBLQ1LXX9, Q1LXX9_DANRE
ZFINZDB-GENE-050419-67 (ttc9b)

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