D. rerio Gene: zgc:162939 - ENSDARG00000068461 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068461
Namezgc:162939
Descriptionzgc:162939 [Source:ZFIN;Acc:ZDB-GENE-070410-115]
OrganismDanio rerio (zebrafish)
Synonym(s)cb974, wu:fa96d09, wu:fc79b08
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
  • 4.34e3
93.07
  • 93.07
  • 85.47
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.65
  • 92.65
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.90
  • 84.90
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
78.50
  • 78.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.50
  • 77.50
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.93e3
  • 6.93e3
  • 7.72e3
76.81
  • 76.81
  • 74.16
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.99e3
  • 6.99e3
76.61
  • 76.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.80
  • 75.80
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.46e3
  • 7.46e3
  • 1.09e4
75.02
  • 75.02
  • 63.37
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
74.89
  • 74.89
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.59
  • 74.59
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.70e3
  • 7.70e3
74.21
  • 74.21
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.15e3
  • 8.15e3
  • 1.58e4
72.70
  • 72.70
  • 47.03
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.45e3
  • 8.45e3
71.71
  • 71.71
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.74e3
  • 8.74e3
70.74
  • 70.74
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.70
  • 69.70
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
9.35e3
  • 9.35e3
  • 9.60e3
  • 1.07e4
  • 1.17e4
  • 1.17e4
  • 1.33e4
  • 1.35e4
  • 1.44e4
  • 1.54e4
  • 1.59e4
68.68
  • 68.68
  • 67.85
  • 64.32
  • 60.96
  • 60.88
  • 55.50
  • 54.79
  • 51.75
  • 48.55
  • 46.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.59e3
  • 9.59e3
  • 1.25e4
  • 1.46e4
67.88
  • 67.88
  • 58.11
  • 51.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.80e3
  • 9.80e3
67.18
  • 67.18
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
9.82e3
  • 9.82e3
  • 1.34e4
  • 1.69e4
  • 1.75e4
67.11
  • 67.11
  • 55.26
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.01e4
  • 1.01e4
  • 1.07e4
66.21
  • 66.21
  • 64.27
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.85
  • 65.85
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
1.04e4
  • 1.04e4
  • 1.09e4
  • 1.18e4
  • 1.23e4
  • 1.23e4
  • 1.25e4
  • 1.26e4
65.19
  • 65.19
  • 63.61
  • 60.39
  • 58.80
  • 58.67
  • 58.31
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.07e4
  • 1.07e4
  • 1.10e4
64.27
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.08e4
  • 1.08e4
  • 1.08e4
  • 1.16e4
  • 1.18e4
63.87
  • 63.87
  • 63.87
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010202lateral line
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.12e4
62.50
  • 62.50
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
62.45
  • 62.45
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.02
  • 62.02
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.19e4
  • 1.19e4
  • 1.48e4
  • 1.50e4
60.30
  • 60.30
  • 50.34
  • 49.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.28e4
  • 1.28e4
  • 1.29e4
  • 1.36e4
  • 1.42e4
  • 1.42e4
57.11
  • 57.11
  • 56.79
  • 54.52
  • 52.47
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.85
  • 56.85
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.30e4
  • 1.30e4
  • 1.34e4
  • 1.42e4
  • 1.42e4
56.49
  • 56.49
  • 54.97
  • 52.47
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.14
  • 55.14
AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
  • 1.39e4
  • 1.41e4
  • 1.41e4
  • 1.41e4
53.55
  • 53.55
  • 53.55
  • 52.75
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.43e4
  • 1.43e4
52.17
  • 52.17
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
1.46e4
  • 1.46e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
  • 1.52e4
  • 1.56e4
  • 1.57e4
  • 1.57e4
  • 1.59e4
  • 1.59e4
  • 1.60e4
  • 1.63e4
  • 1.63e4
  • 1.64e4
  • 1.68e4
51.01
  • 51.01
  • 50.63
  • 49.99
  • 49.92
  • 49.23
  • 47.62
  • 47.45
  • 47.37
  • 46.73
  • 46.64
  • 46.59
  • 45.44
  • 45.43
  • 45.13
  • 43.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001471posterior lateral line system
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000068461 (zgc:162939)
ZFINZDB-GENE-070410-115 (zgc:162939)
EMBLCR847548, CT027611
Uniprot/SPTREMBLB0V1A5, B0V1A5_DANRE, B0V1A7, B0V1A7_DANRE

Do not show this banner again