Gene: zgc:136254 - ENSDARG00000068465 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000068465
Name	zgc:136254
Description	zgc:136254 [Source:ZFIN;Acc:ZDB-GENE-060421-3062]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:109753
Orthologs(s)	3 orthologs
Paralog(s)	3 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	129 129	99.57 99.57	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	226 226	99.25 99.25	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	308 308	98.97 98.97	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	454 454	98.48 98.48	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	787 787	97.37 97.37	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.06e3 1.06e3	96.44 96.44	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	4.26e3 4.26e3 4.29e3	85.74 85.74 85.63	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	4.59e3 4.59e3 8.02e3	84.62 84.62 73.14	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	5.20e3 5.20e3	82.59 82.59	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	5.61e3 5.61e3	81.20 81.20	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	6.25e3 6.25e3	79.09 79.09	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	6.30e3 6.30e3	78.91 78.91	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	7.05e3 7.05e3	76.39 76.39	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	7.42e3 7.42e3	75.16 75.16	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	8.91e3 8.91e3	70.18 70.18	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.07e4 1.07e4 1.55e4	64.01 64.01 48.19	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.88 60.88	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.56e4 1.56e4	47.78 47.78	AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5	1.57e4 1.57e4 1.64e4 1.94e4 2.23e4	47.39 47.39 45.18 34.98 25.43	AEIR AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	1.93e4 1.93e4	35.27 35.27	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	2.06e4 2.06e4	31.08 31.08	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	2.13e4 2.13e4	28.71 28.71	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.26e4 2.26e4	24.29 24.29	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	2.26e4 2.26e4	24.19 24.19	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	1 species Xenopus tropicalis (western clawed frog)	3 genes ENSXETG00000012348 ENSXETG00000031278 ENSXETG00000032730	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000068465.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	3 genes ENSDARG00000034403 zgc:173443 ENSDARG00000053448 si:ch211-251f6.6 ENSDARG00000091558 si:ch211-251f6.7	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000068465.

Cross-references

Ensembl	ENSDARG00000068465 (zgc:136254)
ZFIN	ZDB-GENE-060421-3062 (zgc:136254)
EMBL	BC115053, BX664706
Uniprot/SPTREMBL	Q1RMB1, Q1RMB1_DANRE