D. rerio Gene: rab8b - ENSDARG00000068628 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068628
Namerab8b
DescriptionRAB8B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-070620-16]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:165529
Orthologs(s)29 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.65e3
  • 1.65e3
94.49
  • 94.49
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.68e3
  • 1.68e3
94.38
  • 94.38
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.22
  • 94.22
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.25e3
  • 2.25e3
92.46
  • 92.46
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.79e3
  • 2.79e3
  • 1.01e4
90.66
  • 90.66
  • 66.05
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.39e3
  • 3.39e3
  • 4.00e3
88.65
  • 88.65
  • 86.61
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.45e3
  • 4.45e3
85.09
  • 85.09
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.56e3
  • 4.56e3
84.75
  • 84.75
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.87e3
  • 4.87e3
83.70
  • 83.70
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
5.16e3
  • 5.16e3
  • 1.22e4
  • 1.34e4
  • 1.36e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
82.74
  • 82.74
  • 59.08
  • 54.99
  • 54.53
  • 50.00
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
82.16
  • 82.16
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.17
  • 81.17
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.82e3
  • 5.82e3
80.53
  • 80.53
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.20
  • 80.20
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.89
  • 79.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
77.74
  • 77.74
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
6.81e3
  • 6.81e3
  • 7.79e3
  • 8.15e3
  • 8.46e3
  • 9.72e3
77.22
  • 77.22
  • 73.90
  • 72.72
  • 71.69
  • 67.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.81
  • 73.81
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
7.89e3
  • 7.89e3
  • 8.27e3
73.60
  • 73.60
  • 72.29
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.70e3
  • 8.70e3
70.87
  • 70.87
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
9.41e3
  • 9.41e3
  • 1.06e4
68.51
  • 68.51
  • 64.59
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.43e3
  • 9.43e3
68.43
  • 68.43
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.76e3
  • 9.76e3
  • 1.19e4
67.32
  • 67.32
  • 60.05
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.05e4
  • 1.05e4
64.75
  • 64.75
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.28e4
  • 1.30e4
  • 1.34e4
  • 1.35e4
64.28
  • 64.28
  • 57.14
  • 56.49
  • 54.97
  • 54.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.41e4
57.13
  • 57.13
  • 55.24
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.42e4
  • 1.42e4
  • 1.49e4
52.60
  • 52.60
  • 50.00
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species29 genesCompare expression

Orthology information comes from OMA : ENSDARG00000068628.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria4 genesCompare expression
Opisthokonta23 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000068628.

Cross-references

EnsemblENSDARG00000068628 (rab8b)
ZFINZDB-GENE-070620-16 (rab8b)
EMBLBC142846, CR450827
Uniprot/SPTREMBLA5PLC7, A5PLC7_DANRE

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