Gene: exosc8 - ENSDARG00000068755 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000068755
Name	exosc8
Description	exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1736]
Organism	Danio rerio (zebrafish)
Synonym(s)	opa-interacting protein 2 (3' exoribonuclease family), wu:fb79a10, zgc:110381
Orthologs(s)	19 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	804 804	97.31 97.31	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.22e3 1.22e3	95.92 95.92	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	1.47e3 1.47e3 2.17e3	95.07 95.07 92.75	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.92e3 1.92e3 2.25e3	93.56 93.56 92.46	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	2.15e3 2.15e3	92.80 92.80	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	2.21e3 2.21e3 2.37e3 3.79e3 5.10e3 6.56e3	92.61 92.61 92.08 87.31 82.92 78.03	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	2.72e3 2.72e3 4.53e3	90.89 90.89 84.84	AEIR AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	3.12e3 3.12e3	89.57 89.57	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	3.20e3 3.20e3	89.29 89.29	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	3.23e3 3.23e3	89.19 89.19	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	4.21e3 4.21e3	85.91 85.91	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	4.26e3 4.26e3 7.40e3	85.73 85.73 75.23	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	4.37e3 4.37e3	85.36 85.36	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	4.91e3 4.91e3 9.40e3	83.55 83.55 68.51	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	5.03e3 5.03e3	83.18 83.18	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	5.22e3 5.22e3	82.52 82.52	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	5.30e3 5.30e3	82.27 82.27	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	6.27e3 6.27e3	79.01 79.01	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	7.06e3 7.06e3	76.37 76.37	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.06e3 7.06e3	76.37 76.37	AEIR AEIR
UBERON:0000966	retina	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000032Pharyngula:High-pec	7.31e3 7.31e3 1.28e4 1.29e4 1.30e4 1.34e4	75.54 75.54 57.12 56.79 56.49 54.97	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	8.15e3 8.15e3	72.70 72.70	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	8.38e3 8.38e3	71.93 71.93	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	9.35e3 9.35e3	68.71 68.71	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.49 54.49	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.94 49.94	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	19 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000120699 EXOSC8 ENSMUSG00000027752 Exosc8 ENSPTRG00000005790 EXOSC8 ENSGGOG00000011902 EXOSC8 ENSMMUG00000003588 EXOSC8 ENSRNOG00000051623 Exosc8 ENSBTAG00000011855 EXOSC8 ENSSSCG00000009358 ENSECAG00000012606 EXOSC8 ENSOCUG00000007465 EXOSC8 ENSCAFG00000006115 EXOSC8 ENSFCAG00000003815 EXOSC8 ENSCPOG00000004450 EXOSC8 ENSEEUG00000000433 EXOSC8 ENSMODG00000010052 EXOSC8 ENSOANG00000015500 EXOSC8 ENSGALG00000017048 EXOSC8 ENSACAG00000017648 EXOSC8 ENSXETG00000001819 exosc8	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000068755.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Eukaryota	2 genes ENSDARG00000006392 exosc9 ENSDARG00000100060 exosc7	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000068755.

Cross-references

Ensembl	ENSDARG00000068755 (exosc8)
ZFIN	ZDB-GENE-030131-1736 (exosc8)
EMBL	BC095236, CT573139
Uniprot/SPTREMBL	Q4VBT6, Q4VBT6_DANRE