Gene: tlr7 - ENSDARG00000068812 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000068812
Name	tlr7
Description	toll-like receptor 7 [Source:ZFIN;Acc:ZDB-GENE-040219-11]
Organism	Danio rerio (zebrafish)
Synonym(s)	tlr7a
Orthologs(s)	16 orthologs
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.24e4 1.24e4	58.37 58.37	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.49 51.49	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.68e4 1.68e4	43.90 43.90	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	42.96 42.96	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.97e4 1.97e4	34.16 34.16	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.20e4 2.20e4	26.31 26.31	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.30e4 2.30e4	23.08 23.08	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Canis lupus familiaris (dog) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000196664 TLR7 ENSMUSG00000044583 Tlr7 ENSPTRG00000028318 TLR7 ENSGGOG00000002443 TLR7 ENSMMUG00000014254 TLR7 ENSRNOG00000004249 Tlr7 ENSBTAG00000022161 TLR7 ENSSSCG00000012117 TLR7 ENSECAG00000007883 TLR7 ENSCAFG00000011698 TLR7 ENSCPOG00000015107 TLR7 ENSEEUG00000003198 TLR7 ENSOANG00000002612 TLR7 ENSGALG00000016590 TLR7 ENSACAG00000001655 TLR7 ENSXETG00000027076 tlr7	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000068812.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Vertebrata	1 gene ENSDARG00000090119 TLR8 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000068812.

Cross-references

Ensembl	ENSDARG00000068812 (tlr7)
ZFIN	ZDB-GENE-040219-11 (tlr7)
Uniprot/SPTREMBL	F1QY64, F1QY64_DANRE