D. rerio Gene: PTCHD3 (1 to many) - ENSDARG00000068874 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000068874
NamePTCHD3 (1 to many)
Descriptionsi:ch211-250m6.7 [Source:ZFIN;Acc:ZDB-GENE-041210-239]
OrganismDanio rerio (zebrafish)
Synonym(s)flj44037, ptr, si:dkey-61p9.10
Orthologs(s)18 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
86.47
  • 86.47
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.51e3
  • 6.51e3
78.21
  • 78.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.70
  • 68.70
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.40
  • 57.40
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.34e4
  • 1.34e4
55.01
  • 55.01
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.42
  • 53.42
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.47e4
  • 1.47e4
50.72
  • 50.72
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.61
  • 48.61
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.51
  • 48.51
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.81
  • 34.81
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.47
  • 30.47
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.14e4
  • 2.14e4
  • 2.41e4
28.28
  • 28.28
  • 19.33
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.59e4
  • 2.59e4
13.12
  • 13.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species17 genesCompare expression
Bilateria17 species18 genesCompare expression

Orthology information comes from OMA : ENSDARG00000068874.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000068874.

Cross-references

EnsemblENSDARG00000068874 (PTCHD3 (1 to many))
HGNCHGNC:24776 (PTCHD3 (1 to many))
ZFINZDB-GENE-041210-239 (si:ch211-250m6.7)
Uniprot/SPTREMBLF1QRU8, F1QRU8_DANRE, U3JAL3, U3JAL3_DANRE

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