Gene: gabra1 - ENSDARG00000068989 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000068989
Name	gabra1
Description	gamma-aminobutyric acid (GABA) A receptor, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-061013-194]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:153566
Orthologs(s)	15 orthologs
Paralog(s)	5 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	425 425	98.58 98.58	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.64e3 1.64e3	94.52 94.52	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	5.07e3 5.07e3 5.14e3	83.01 83.01 82.79	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	5.15e3 5.15e3 6.97e3 1.68e4 2.00e4 2.08e4	82.77 82.77 76.67 43.67 32.88 30.21	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	1.06e4 1.06e4 1.52e4	64.66 64.66 49.26	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.27e4 1.27e4 1.70e4	57.33 57.33 43.19	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.43e4 1.43e4	51.98 51.98	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.45e4 1.45e4	51.44 51.44	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.91e4 1.91e4	35.92 35.92	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.29e4 2.29e4	23.32 23.32	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	2.53e4 2.53e4	15.31 15.31	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	15 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	15 genes ENSG00000022355 GABRA1 ENSMUSG00000010803 Gabra1 ENSPTRG00000017499 GABRA1 ENSMMUG00000007296 GABRA1 ENSRNOG00000003512 Gabra1 ENSBTAG00000030286 GABRA1 ENSSSCG00000023661 ENSECAG00000006620 GABRA1 ENSOCUG00000016109 GABRA1 ENSCAFG00000001883 GABRA1 ENSFCAG00000008133 GABRA1 ENSCPOG00000006871 GABRA1 ENSGALG00000001698 GABRA1 ENSACAG00000014898 GABRA1 ENSXETG00000031147 GABRA1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000068989.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	5 genes ENSDARG00000034011 GABRA2 (1 to many) ENSDARG00000058736 gabra6b ENSDARG00000070730 gabra5 ENSDARG00000075058 gabra6a ENSDARG00000091459 GABRA2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000068989.

Cross-references

Ensembl	ENSDARG00000068989 (gabra1)
ZFIN	ZDB-GENE-061013-194 (gabra1)
EMBL	BC124697, BC164540, CABZ01068465, CABZ01068466, CABZ01068467, CABZ01095604, CR847531
Uniprot/SPTREMBL	F1R2E6, F1R2E6_DANRE, Q08BJ3, Q08BJ3_DANRE