Gene: pcyox1l - ENSDARG00000069003 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000069003
Name	pcyox1l
Description	prenylcysteine oxidase 1 like [Source:ZFIN;Acc:ZDB-GENE-141212-302]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch211-270b18.2
Orthologs(s)	18 orthologs
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	2.62e3 2.62e3	91.23 91.23	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	3.41e3 3.41e3 3.99e3	88.57 88.57 86.64	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	4.63e3 4.63e3	84.51 84.51	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	4.84e3 4.84e3	83.80 83.80	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	4.93e3 4.93e3 6.71e3	83.49 83.49 77.54	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	5.14e3 5.14e3	82.79 82.79	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	5.29e3 5.29e3	82.30 82.30	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5	5.72e3 5.72e3 7.75e3 7.81e3 9.14e3 9.32e3	80.86 80.86 74.06 73.84 69.41 68.81	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	5.74e3 5.74e3	80.79 80.79	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	6.37e3 6.37e3	78.67 78.67	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	7.05e3 7.05e3 7.54e3	76.40 76.40 74.75	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	7.32e3 7.32e3	75.48 75.48	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	7.35e3 7.35e3	75.38 75.38	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.53e3 7.53e3	74.79 74.79	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.55e3 7.55e3	74.73 74.73	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.64e3 7.64e3	74.43 74.43	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	7.96e3 7.96e3	73.35 73.35	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	8.55e3 8.55e3	71.37 71.37	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	9.20e3 9.20e3	69.21 69.21	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	9.90e3 9.90e3 1.28e4	66.85 66.85 57.30	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.40 65.40	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.10e4 1.10e4	63.12 63.12	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.12e4 1.12e4 1.25e4	62.42 62.42 58.04	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.13e4 1.13e4	62.17 62.17	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.41e4 1.41e4	52.87 52.87	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.53e4 1.53e4	48.90 48.90	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000145882 PCYOX1L ENSMUSG00000024579 Pcyox1l ENSPTRG00000017397 PCYOX1L ENSGGOG00000005413 PCYOX1L ENSMMUG00000021663 PCYOX1L ENSRNOG00000019643 Pcyox1l ENSBTAG00000019951 PCYOX1L ENSSSCG00000014433 PCYOX1L ENSECAG00000007083 PCYOX1L ENSOCUG00000008337 PCYOX1L ENSCAFG00000018299 PCYOX1L ENSFCAG00000003625 PCYOX1L ENSCPOG00000024170 PCYOX1L ENSEEUG00000004928 PCYOX1L ENSOANG00000013478 PCYOX1L ENSGALG00000002665 PCYOX1L ENSACAG00000015622 PCYOX1L ENSXETG00000033269 PCYOX1L	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000069003.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	1 gene ENSDARG00000103052 pcyox1	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000069003.

Cross-references

Ensembl	ENSDARG00000069003 (pcyox1l)
ZFIN	ZDB-GENE-141212-302 (pcyox1l)
EMBL	BX005397, CABZ01086055, CABZ01086056
Uniprot/SPTREMBL	E7FDT3, E7FDT3_DANRE, F1QFH3, F1QFH3_DANRE