D. rerio Gene: pex11b - ENSDARG00000069147 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069147
Namepex11b
Descriptionperoxisomal biogenesis factor 11 beta [Source:ZFIN;Acc:ZDB-GENE-060825-289]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153402
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.52e3
  • 2.52e3
91.56
  • 91.56
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
2.79e3
  • 2.79e3
  • 3.61e3
90.66
  • 90.66
  • 87.90
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.01e3
  • 3.01e3
  • 1.47e4
89.93
  • 89.93
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.38
  • 89.38
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.33
  • 87.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
83.01
  • 83.01
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.08e3
  • 5.08e3
  • 1.41e4
82.98
  • 82.98
  • 52.77
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.20e3
  • 5.20e3
82.60
  • 82.60
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
79.25
  • 79.25
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.44
  • 77.44
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.11e3
  • 7.11e3
76.20
  • 76.20
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.31e3
  • 7.31e3
75.53
  • 75.53
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.35
  • 75.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
74.49
  • 74.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.64e3
  • 7.64e3
74.42
  • 74.42
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.05e3
  • 8.05e3
73.03
  • 73.03
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
72.80
  • 72.80
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.67e3
  • 8.67e3
  • 1.06e4
70.97
  • 70.97
  • 64.63
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.85e3
  • 8.85e3
  • 1.11e4
70.35
  • 70.35
  • 62.98
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.24
  • 69.24
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.70
  • 68.70
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.56e3
  • 9.56e3
  • 1.19e4
68.00
  • 68.00
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.76e3
  • 9.76e3
67.31
  • 67.31
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
1.02e4
  • 1.02e4
  • 1.04e4
  • 1.18e4
  • 1.21e4
  • 1.32e4
65.74
  • 65.74
  • 65.26
  • 60.51
  • 59.50
  • 55.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
64.26
  • 64.26
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000069147.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000069147.

Cross-references

EnsemblENSDARG00000069147 (pex11b)
ZFINZDB-GENE-060825-289 (pex11b)
EMBLBC122270, BC164608, BX548249
Uniprot/SPTREMBLF1QWT8, F1QWT8_DANRE, Q0P453, Q0P453_DANRE

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