Gene: pdia5 - ENSDARG00000069242 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000069242
Name	pdia5
Description	protein disulfide isomerase family A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030521-5]
Organism	Danio rerio (zebrafish)
Synonym(s)	b0s6d7, sb:cb441, wu:fb98h09, zgc:172235
Orthologs(s)	23 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002107	liver	[+] 3 stages UBERON:0000066fully formed stage ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	2.17e3 2.17e3 5.60e3 7.12e3	92.74 92.74 81.24 76.18	AEIR AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	2.30e3 2.30e3	92.31 92.31	AEIR AEIR
UBERON:0008897	fin	[+] 2 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	2.99e3 2.99e3 2.99e3	90.00 90.00 90.00	AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 14 stages ZFS:0000042Juvenile:Days 30-44 UBERON:0000106zygote stage ZFS:0000033Hatching:Long-pec ZFS:0000040Larval:Days 14-20 ZFS:0000030Pharyngula:Prim-15 ZFS:0000029Pharyngula:Prim-5 ZFS:0000036Larval:Day 4 ZFS:0000037Larval:Day 5 ZFS:0000026Segmentation:14-19 somites ZFS:0000019Gastrula:Shield ZFS:0000024Segmentation:5-9 somites ZFS:0000022Gastrula:Bud ZFS:0000021Gastrula:90%-epiboly ZFS:0000020Gastrula:75%-epiboly	3.06e3 3.06e3 3.47e3 4.09e3 4.11e3 4.84e3 5.15e3 5.32e3 5.97e3 6.15e3 7.56e3 8.16e3 9.71e3 1.09e4 1.10e4	89.75 89.75 88.38 86.30 86.24 83.80 82.75 82.20 80.00 79.41 74.69 72.68 67.48 63.57 63.14	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages ZFS:0000033Hatching:Long-pec UBERON:0000066fully formed stage	3.15e3 3.15e3 5.98e3	89.46 89.46 79.98	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	3.52e3 3.52e3	88.22 88.22	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	3.63e3 3.63e3	87.86 87.86	AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	3.73e3 3.73e3	87.50 87.50	AEIR AEIR
UBERON:0000307	blastula	[+] 5 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell ZFS:0000009Blastula:256-cell ZFS:0000014Blastula:Sphere ZFS:0000016Blastula:30%-epiboly	3.96e3 3.96e3 4.68e3 4.98e3 5.06e3 5.79e3	86.75 86.75 84.33 83.32 83.05 80.62	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	4.04e3 4.04e3	86.49 86.49	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 2 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	4.07e3 4.07e3 4.98e3	86.36 86.36 83.33	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	4.31e3 4.31e3	85.58 85.58	AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000026Segmentation:14-19 somites ZFS:0000031Pharyngula:Prim-25 ZFS:0000030Pharyngula:Prim-15 ZFS:0000025Segmentation:10-13 somites ZFS:0000037Larval:Day 5 ZFS:0000024Segmentation:5-9 somites	4.48e3 4.48e3 4.80e3 4.87e3 4.94e3 5.54e3 5.70e3 5.76e3 7.09e3 8.28e3 8.33e3	85.01 85.01 83.94 83.69 83.44 81.45 80.91 80.73 76.25 72.28 72.12	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	4.53e3 4.53e3	84.85 84.85	AEIR AEIR
UBERON:0002328	notochord	[+] 7 stages ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000026Segmentation:14-19 somites	4.67e3 4.67e3 5.27e3 6.72e3 1.05e4 1.09e4 1.09e4 1.32e4	84.37 84.37 82.35 77.49 64.98 63.61 63.61 55.97	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000966	retina	[+] 4 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	4.94e3 4.94e3 5.01e3 6.37e3 1.08e4	83.48 83.48 83.22 78.68 63.69	AEIR AEIR AEIR AEIR AEIR
UBERON:0004741	cleithrum	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec	4.98e3 4.98e3 5.43e3	83.33 83.33 81.81	AEIR AEIR AEIR
UBERON:0001945	superior colliculus	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	4.98e3 4.98e3 5.50e3 5.50e3 6.64e3 6.64e3	83.32 83.32 81.57 81.57 77.77 77.77	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:2001357	alar plate midbrain	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	5.23e3 5.23e3 5.50e3 5.50e3	82.49 82.49 81.57 81.57	AEIR AEIR AEIR AEIR
UBERON:0003055	periderm	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	5.27e3 5.27e3 5.98e3 5.98e3	82.35 82.35 79.99 79.99	AEIR AEIR AEIR AEIR
UBERON:0010312	immature eye	[+] 3 stages ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites ZFS:0000029Pharyngula:Prim-5	5.27e3 5.27e3 5.50e3 6.40e3	82.35 82.35 81.57 78.56	AEIR AEIR AEIR AEIR
UBERON:0007010	cleaving embryo	[+] 1 stage ZFS:0000005Cleavage:16-cell	5.41e3 5.41e3	81.87 81.87	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	5.42e3 5.42e3 9.34e3	81.85 81.85 68.74	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	5.53e3 5.53e3 7.05e3	81.48 81.48 76.40	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	5.57e3 5.57e3	81.36 81.36	AEIR AEIR
UBERON:0007269	pectoral appendage musculature	[+] 4 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	5.60e3 5.60e3 5.60e3 7.08e3 7.08e3	81.24 81.24 81.24 76.30 76.30	AEIR AEIR AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	5.85e3 5.85e3	80.41 80.41	AEIR AEIR
UBERON:0003059	presomitic mesoderm	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	5.93e3 5.93e3	80.15 80.15	AEIR AEIR
UBERON:0001003	skin epidermis	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	5.98e3 5.98e3 5.98e3 6.40e3	79.99 79.99 79.99 78.56	AEIR AEIR AEIR AEIR
UBERON:0003060	pronephric duct	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites	5.98e3 5.98e3 5.98e3 6.29e3	79.99 79.99 79.99 78.94	AEIR AEIR AEIR AEIR
UBERON:0002540	lateral line system	[+] 5 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	6.40e3 6.40e3 6.40e3 6.64e3 6.64e3 6.64e3	78.56 78.56 78.56 77.77 77.77 77.77	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000019Gastrula:Shield UBERON:0000109gastrula stage ZFS:0000022Gastrula:Bud ZFS:0000017Gastrula:50%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000020Gastrula:75%-epiboly	6.44e3 6.44e3 7.76e3 9.44e3 1.13e4 1.15e4 1.17e4	78.45 78.45 74.01 68.40 62.21 61.48 60.88	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000035Larval:Protruding-mouth UBERON:0000069larval stage ZFS:0000037Larval:Day 5	6.50e3 6.50e3 7.20e3 7.99e3	78.25 78.25 75.88 73.24	AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	7.00e3 7.00e3	76.56 76.56	AEIR AEIR
UBERON:0003051	ear vesicle	[+] 5 stages ZFS:0000032Pharyngula:High-pec ZFS:0000027Segmentation:20-25 somites ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites	7.08e3 7.08e3 7.15e3 7.47e3 8.47e3 8.54e3	76.30 76.30 76.07 74.99 71.64 71.41	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002329	somite	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	7.18e3 7.18e3	75.96 75.96	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	7.25e3 7.25e3 8.57e3	75.74 75.74 71.32	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.37e3 7.37e3	75.33 75.33	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.38e3 7.38e3	75.28 75.28	AEIR AEIR
UBERON:0002082	cardiac ventricle	[+] 1 stage UBERON:0000066fully formed stage	7.74e3 7.74e3	74.10 74.10	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	7.88e3 7.88e3	73.63 73.63	AEIR AEIR
UBERON:0005886	post-hyoid pharyngeal arch skeleton	[+] 2 stages ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	7.91e3 7.91e3 7.91e3	73.52 73.52 73.52	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	8.43e3 8.43e3	71.77 71.77	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	9.20e3 9.20e3	69.19 69.19	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	9.69e3 9.69e3	67.57 67.57	AEIR AEIR
UBERON:2000058	polster	[+] 3 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites	9.96e3 9.96e3 9.96e3 1.05e4	66.65 66.65 66.65 64.98	AEIR AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.27e4 1.27e4	57.33 57.33	AEIR AEIR
UBERON:2000004	anterior axial hypoblast	[+] 6 stages ZFS:0000017Gastrula:50%-epiboly ZFS:0000018Gastrula:Germ-ring ZFS:0000019Gastrula:Shield ZFS:0000021Gastrula:90%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000020Gastrula:75%-epiboly	1.39e4 1.39e4 1.39e4 1.39e4 1.39e4 1.39e4 1.39e4	53.55 53.55 53.55 53.55 53.55 53.55 53.31	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002538	hatching gland	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	1.39e4 1.39e4	53.31 53.31	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole)	17 genes ENSG00000065485 PDIA5 ENSMUSG00000022844 Pdia5 ENSPTRG00000015302 PDIA5 ENSGGOG00000006726 PDIA5 ENSMMUG00000007696 PDIA5 ENSRNOG00000032327 Pdia5 ENSBTAG00000018877 PDIA5 ENSSSCG00000011870 PDIA5 ENSECAG00000015276 PDIA5 ENSOCUG00000006151 PDIA5 ENSCAFG00000012051 PDIA5 ENSFCAG00000000938 PDIA5 ENSCPOG00000009168 PDIA5 ENSEEUG00000000169 PDIA5 ENSMODG00000018328 PDIA5 ENSGALG00000011689 PDIA5 ENSACAG00000011064 PDIA5	Compare expression	[+]
Bilateria	23 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Anolis carolinensis (green anole) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	23 genes ENSG00000065485 PDIA5 ENSMUSG00000022844 Pdia5 FBgn0032514 CG9302 ENSPTRG00000015302 PDIA5 ENSGGOG00000006726 PDIA5 ENSMMUG00000007696 PDIA5 ENSRNOG00000032327 Pdia5 ENSBTAG00000018877 PDIA5 ENSSSCG00000011870 PDIA5 ENSECAG00000015276 PDIA5 ENSOCUG00000006151 PDIA5 ENSCAFG00000012051 PDIA5 ENSFCAG00000000938 PDIA5 ENSCPOG00000009168 PDIA5 ENSEEUG00000000169 PDIA5 ENSMODG00000018328 PDIA5 ENSGALG00000011689 PDIA5 ENSACAG00000011064 PDIA5 FBgn0098665 GF21665 FBgn0136808 GI14054 FBgn0193478 GD22065 FBgn0205421 GJ18260 FBgn0229452 GE11655	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000069242.

Cross-references

Ensembl	ENSDARG00000069242 (pdia5)
ZFIN	ZDB-GENE-030521-5 (pdia5)
EMBL	BX294387, BX511075
Uniprot/SPTREMBL	B0S5S6, B0S5S6_DANRE