D. rerio Gene: matn3a - ENSDARG00000069245 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069245
Namematn3a
Descriptionmatrilin 3a [Source:ZFIN;Acc:ZDB-GENE-040822-21]
OrganismDanio rerio (zebrafish)
Synonym(s)f1qh93, ns:zf-e359, si:dkeyp-50f7.4, zgc:101120
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
799
  • 799
  • 2.05e3
  • 6.48e3
  • 1.57e4
  • 2.23e4
97.33
  • 97.33
  • 93.12
  • 78.29
  • 47.40
  • 25.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
912
  • 912
  • 1.87e3
96.95
  • 96.95
  • 93.73
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.56
  • 95.56
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
2.20e3
  • 2.20e3
92.65
  • 92.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.36
  • 44.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.64
  • 42.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.21
  • 42.21
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.93
  • 39.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.60
  • 39.60
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.58
  • 36.58
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.70
  • 33.70
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.80
  • 30.80
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
26.10
  • 26.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069245.

Cross-references

EnsemblENSDARG00000069245 (matn3a)
ZFINZDB-GENE-040822-21 (matn3a)
EMBLBC080220, BC154373, BX649436, CR392340
Uniprot/SPTREMBLF1QH94, F1QH94_DANRE, F1QH95, F1QH95_DANRE, Q68EK6, Q68EK6_DANRE, U3JAH6, U3JAH6_DANRE

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