D. rerio Gene: trmt5 - ENSDARG00000069278 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069278
Nametrmt5
DescriptionTRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5978]
OrganismDanio rerio (zebrafish)
Synonym(s)trm5, wu:fi28b08
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.32e3
  • 1.32e3
  • 1.41e4
95.60
  • 95.60
  • 52.84
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.63e3
  • 1.63e3
94.55
  • 94.55
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
92.99
  • 92.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.58
  • 89.58
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
3.49e3
  • 3.49e3
  • 4.53e3
  • 4.66e3
  • 4.72e3
  • 6.46e3
88.33
  • 88.33
  • 84.83
  • 84.41
  • 84.20
  • 78.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.33
  • 88.33
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
83.88
  • 83.88
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
83.47
  • 83.47
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.18e3
  • 5.18e3
82.65
  • 82.65
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
5.36e3
  • 5.36e3
  • 8.29e3
  • 8.72e3
  • 8.84e3
  • 8.93e3
  • 8.99e3
  • 9.33e3
  • 1.23e4
  • 1.28e4
  • 1.32e4
  • 1.35e4
  • 1.39e4
  • 1.40e4
  • 1.42e4
  • 1.44e4
  • 1.45e4
  • 1.47e4
82.04
  • 82.04
  • 72.25
  • 70.79
  • 70.40
  • 70.09
  • 69.90
  • 68.77
  • 58.68
  • 57.08
  • 55.77
  • 54.63
  • 53.30
  • 53.25
  • 52.57
  • 51.84
  • 51.40
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.43e3
  • 5.43e3
81.82
  • 81.82
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.51e3
  • 5.51e3
81.56
  • 81.56
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
5.54e3
  • 5.54e3
  • 5.55e3
  • 6.53e3
  • 8.60e3
  • 8.71e3
  • 8.76e3
81.44
  • 81.44
  • 81.43
  • 78.13
  • 71.20
  • 70.83
  • 70.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.99e3
  • 5.99e3
  • 1.38e4
79.94
  • 79.94
  • 53.77
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.74e3
  • 6.74e3
  • 6.98e3
  • 8.06e3
  • 8.17e3
  • 9.02e3
  • 9.28e3
  • 1.02e4
  • 1.18e4
  • 1.26e4
  • 1.32e4
77.44
  • 77.44
  • 76.63
  • 73.03
  • 72.64
  • 69.80
  • 68.92
  • 65.87
  • 60.35
  • 57.98
  • 55.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.06e3
  • 7.06e3
76.37
  • 76.37
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.27e3
  • 7.27e3
75.65
  • 75.65
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.49e3
  • 7.49e3
74.92
  • 74.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
74.66
  • 74.66
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
  • 1.19e4
70.90
  • 70.90
  • 60.18
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.79e3
  • 8.79e3
70.58
  • 70.58
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
70.03
  • 70.03
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.29e3
  • 9.29e3
  • 1.62e4
68.88
  • 68.88
  • 45.81
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
9.51e3
  • 9.51e3
  • 1.07e4
  • 1.09e4
68.16
  • 68.16
  • 64.03
  • 63.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.65e3
  • 9.65e3
67.71
  • 67.71
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
66.64
  • 66.64
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.52
  • 65.52
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 1.07e4
64.65
  • 64.65
  • 64.16
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.32
  • 64.32
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
  • 1.21e4
60.49
  • 60.49
  • 59.65
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.97
  • 59.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.21e4
  • 1.21e4
  • 1.28e4
  • 1.46e4
59.51
  • 59.51
  • 56.99
  • 51.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.03
  • 58.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000069278.

Cross-references

EnsemblENSDARG00000069278 (trmt5)
ZFINZDB-GENE-030131-5978 (trmt5)
EMBLBX537123
Uniprot/SWISSPROTB8A5G9, TRM5_DANRE

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