D. rerio Gene: lrrc4.1 - ENSDARG00000069402 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069402
Namelrrc4.1
Descriptionleucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
OrganismDanio rerio (zebrafish)
Synonym(s)lrrc4a, lrrc4b, si:ch211-235l7.2
Orthologs(s)16 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.09e3
  • 1.09e3
  • 7.08e3
  • 8.53e3
  • 1.01e4
96.35
  • 96.35
  • 76.29
  • 71.45
  • 66.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.82e3
  • 1.82e3
  • 1.24e4
93.91
  • 93.91
  • 58.61
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
  • 6.94e3
91.99
  • 91.99
  • 76.76
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
2.40e3
  • 2.40e3
  • 6.20e3
  • 6.59e3
  • 7.68e3
  • 1.01e4
  • 1.11e4
  • 1.19e4
  • 1.39e4
  • 1.40e4
  • 1.41e4
  • 1.43e4
91.96
  • 91.96
  • 79.23
  • 77.93
  • 74.27
  • 66.23
  • 62.80
  • 60.01
  • 53.29
  • 53.18
  • 52.70
  • 52.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
3.69e3
  • 3.69e3
  • 5.81e3
  • 7.13e3
  • 1.10e4
  • 1.25e4
  • 1.28e4
  • 1.31e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
87.66
  • 87.66
  • 80.56
  • 76.14
  • 63.33
  • 58.09
  • 57.13
  • 56.23
  • 41.29
  • 40.40
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.82e3
  • 4.82e3
  • 6.44e3
  • 7.94e3
83.85
  • 83.85
  • 78.45
  • 73.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.40e3
  • 6.40e3
  • 7.97e3
  • 9.96e3
78.57
  • 78.57
  • 73.32
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.54e3
  • 8.54e3
  • 9.19e3
  • 9.60e3
  • 1.12e4
71.42
  • 71.42
  • 69.22
  • 67.85
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.83e3
  • 8.83e3
  • 9.51e3
  • 1.07e4
  • 1.12e4
  • 1.12e4
70.44
  • 70.44
  • 68.16
  • 64.26
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.10e3
  • 1.05e4
  • 1.07e4
  • 1.07e4
69.98
  • 69.98
  • 69.55
  • 64.98
  • 64.26
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.34e3
  • 9.34e3
  • 9.34e3
  • 1.12e4
  • 1.12e4
  • 1.15e4
68.74
  • 68.74
  • 68.74
  • 62.48
  • 62.48
  • 61.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.34e3
  • 9.34e3
  • 9.96e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
68.74
  • 68.74
  • 66.65
  • 66.65
  • 65.61
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.34e3
  • 9.34e3
  • 9.67e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
68.74
  • 68.74
  • 67.63
  • 66.65
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.44e3
  • 9.44e3
  • 9.44e3
  • 1.02e4
  • 1.06e4
  • 1.08e4
68.40
  • 68.40
  • 68.40
  • 65.77
  • 64.56
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.22e4
  • 1.22e4
  • 1.22e4
66.66
  • 66.66
  • 66.66
  • 59.08
  • 59.08
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.21
  • 65.21
AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.91
  • 58.91
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
57.87
  • 57.87
  • 57.87
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.86
  • 54.86
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
  • 1.47e4
54.58
  • 54.58
  • 50.76
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.19
  • 52.19
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.45e4
  • 1.45e4
  • 1.46e4
51.34
  • 51.34
  • 51.13
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.50
  • 50.50
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.51
  • 48.51
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.67e4
  • 1.67e4
  • 1.69e4
  • 1.75e4
43.99
  • 43.99
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.72e4
  • 1.72e4
42.39
  • 42.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.16
  • 42.16
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.15
  • 42.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069402.

Cross-references

EnsemblENSDARG00000069402 (lrrc4.1)
ZFINZDB-GENE-041210-129 (lrrc4.1)
EMBLBX855622
Uniprot/SPTREMBLE9QDQ3, E9QDQ3_DANRE, I7HJH4, I7HJH4_DANRE

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