D. rerio Gene: mhc1zca - ENSDARG00000069471 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069471
Namemhc1zca
Descriptionmajor histocompatibility complex class I ZCA [Source:ZFIN;Acc:ZDB-GENE-070424-4]
OrganismDanio rerio (zebrafish)
Synonym(s)dz63m10.1, si:ch211-287j19.5, zgc:111893, zgc:136614
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
445
  • 445
98.51
  • 98.51
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
526
  • 526
98.24
  • 98.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
867
  • 867
97.10
  • 97.10
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.15
  • 89.15
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.11e3
  • 4.11e3
  • 1.32e4
86.25
  • 86.25
  • 55.91
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.56e3
  • 4.56e3
  • 1.97e4
84.75
  • 84.75
  • 34.03
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.13e3
  • 6.13e3
79.46
  • 79.46
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
73.72
  • 73.72
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.14e3
  • 8.14e3
72.75
  • 72.75
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.97
  • 71.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.41
  • 64.41
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.19
  • 61.19
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.22e4
  • 1.22e4
  • 1.41e4
  • 1.56e4
59.23
  • 59.23
  • 52.72
  • 47.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.27e4
  • 1.27e4
  • 1.35e4
  • 1.56e4
  • 1.58e4
  • 1.66e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.90e4
57.50
  • 57.50
  • 54.85
  • 47.92
  • 47.07
  • 44.45
  • 40.54
  • 40.40
  • 40.27
  • 36.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.45
  • 57.45
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.44e4
  • 1.44e4
  • 1.52e4
  • 1.54e4
  • 1.57e4
  • 1.57e4
  • 1.57e4
  • 1.58e4
  • 1.58e4
  • 1.61e4
  • 1.62e4
  • 1.62e4
  • 1.67e4
  • 1.68e4
51.79
  • 51.79
  • 49.10
  • 48.31
  • 47.58
  • 47.51
  • 47.51
  • 47.11
  • 47.04
  • 46.22
  • 45.73
  • 45.70
  • 44.00
  • 43.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.45e4
  • 1.45e4
51.45
  • 51.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.53e4
  • 1.53e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.71e4
  • 1.71e4
  • 1.74e4
  • 1.85e4
42.81
  • 42.81
  • 41.75
  • 38.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.39
  • 40.39
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
  • 1.91e4
39.35
  • 39.35
  • 36.20
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi5 genesCompare expression
Clupeocephala6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069471.

Cross-references

EnsemblENSDARG00000069471 (mhc1zca)
ZFINZDB-GENE-070424-4 (mhc1zca)
EMBLBC115196, BX005416, KC607835
Uniprot/SPTREMBLA4FUM4, A4FUM4_DANRE, F1QEW6, F1QEW6_DANRE

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