D. rerio Gene: zgc:162396 - ENSDARG00000069549 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069549
Namezgc:162396
Descriptionzgc:162396 [Source:ZFIN;Acc:ZDB-GENE-030131-1190]
OrganismDanio rerio (zebrafish)
Synonym(s)fb62c07, si:ch211-31o18.2, wu:fb62c07
Orthologs(s)4 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
533
  • 533
98.22
  • 98.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
94.18
  • 94.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.64
  • 92.64
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
88.44
  • 88.44
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
3.48e3
  • 3.48e3
  • 7.20e3
  • 7.52e3
  • 8.38e3
  • 1.01e4
88.35
  • 88.35
  • 75.91
  • 74.81
  • 71.94
  • 66.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.77e3
  • 3.77e3
  • 6.86e3
87.38
  • 87.38
  • 77.04
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
87.35
  • 87.35
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
85.68
  • 85.68
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.33e3
  • 4.33e3
  • 5.46e3
85.50
  • 85.50
  • 81.71
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.41e3
  • 4.41e3
85.25
  • 85.25
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.67e3
  • 4.67e3
  • 6.28e3
84.36
  • 84.36
  • 78.97
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
83.45
  • 83.45
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.40
  • 83.40
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.87
  • 82.87
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.32e3
  • 5.32e3
82.18
  • 82.18
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
82.16
  • 82.16
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.57e3
  • 5.57e3
81.36
  • 81.36
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
81.10
  • 81.10
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.00e3
  • 6.00e3
79.92
  • 79.92
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.50e3
  • 6.50e3
78.24
  • 78.24
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.60
  • 70.60
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
9.13e3
  • 9.13e3
  • 1.04e4
69.43
  • 69.43
  • 65.33
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.40e3
  • 9.40e3
  • 1.15e4
68.52
  • 68.52
  • 61.42
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.20e4
  • 1.20e4
59.95
  • 59.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069549.

Cross-references

EnsemblENSDARG00000069549 (zgc:162396)
ZFINZDB-GENE-030131-1190 (zgc:162396)
EMBLBC133968, BX004815, CU469511
Uniprot/SPTREMBLF1Q907, F1Q907_DANRE, Q1LYQ0, Q1LYQ0_DANRE

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