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D. rerio Gene: lgi2b - ENSDARG00000069701 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069701
Namelgi2b
Descriptionleucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
OrganismDanio rerio (zebrafish)
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.74e3
  • 5.74e3
80.78
  • 80.78
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.47
  • 77.47
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.65e3
  • 8.65e3
  • 1.23e4
71.04
  • 71.04
  • 58.74
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.13e4
  • 1.13e4
  • 1.63e4
  • 1.73e4
  • 1.81e4
  • 1.98e4
62.07
  • 62.07
  • 45.46
  • 42.17
  • 39.44
  • 33.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.65
  • 59.65
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.29e4
  • 1.29e4
  • 1.55e4
56.87
  • 56.87
  • 47.96
AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.96
  • 31.96
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.71
  • 30.71
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
24.14
  • 24.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069701.

Cross-references

EnsemblENSDARG00000069701 (lgi2b)
ZFINZDB-GENE-060217-3 (lgi2b)
Uniprot/SPTREMBLF1Q950, F1Q950_DANRE

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