D. rerio Gene: pou4f2 - ENSDARG00000069737 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069737
Namepou4f2
DescriptionPOU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
OrganismDanio rerio (zebrafish)
Synonym(s)brn-3b, brn3.2, brn3b, brn3b-l, pou4f2/brn-3bgn
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.87e3
  • 1.87e3
  • 1.40e4
93.75
  • 93.75
  • 53.16
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
  • 1.65e4
93.02
  • 93.02
  • 44.74
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.09e3
  • 4.09e3
86.32
  • 86.32
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.27e3
  • 4.27e3
  • 1.31e4
85.70
  • 85.70
  • 56.26
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
4.58e3
  • 4.58e3
  • 6.07e3
  • 1.55e4
  • 1.67e4
  • 1.71e4
84.65
  • 84.65
  • 79.68
  • 48.07
  • 44.24
  • 42.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
6.01e3
  • 6.01e3
  • 1.07e4
  • 1.22e4
79.88
  • 79.88
  • 64.01
  • 59.18
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
8.96e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 1.08e4
  • 1.49e4
69.99
  • 69.99
  • 69.99
  • 69.99
  • 63.87
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.30e4
  • 1.33e4
  • 1.54e4
  • 1.56e4
61.98
  • 61.98
  • 56.62
  • 55.63
  • 48.28
  • 47.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000027Segmentation:20-25 somites
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000027Segmentation:20-25 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000027Segmentation:20-25 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.63e4
  • 1.63e4
  • 1.75e4
45.46
  • 45.46
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.23
  • 29.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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