D. rerio Gene: sox1a - ENSDARG00000069866 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069866
Namesox1a
DescriptionSRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]
OrganismDanio rerio (zebrafish)
Synonym(s)b0uy96, fi38c08, fj38h03, q4v997, wu:fi38c08, wu:fj38h03, zgc:92865
Orthologs(s)9 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.03e3
  • 4.03e3
86.50
  • 86.50
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
  • 2.03e4
85.18
  • 85.18
  • 31.90
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
5.00e3
  • 5.00e3
  • 6.17e3
  • 1.45e4
83.25
  • 83.25
  • 79.34
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
6.18e3
  • 6.18e3
  • 7.45e3
  • 7.94e3
  • 8.31e3
  • 9.01e3
  • 9.09e3
  • 9.97e3
  • 1.03e4
  • 1.06e4
  • 1.18e4
79.30
  • 79.30
  • 75.07
  • 73.43
  • 72.18
  • 69.84
  • 69.56
  • 66.63
  • 65.37
  • 64.47
  • 60.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
7.80e3
  • 7.80e3
  • 8.79e3
  • 9.69e3
  • 9.84e3
  • 1.05e4
  • 1.06e4
  • 1.10e4
  • 1.15e4
  • 1.24e4
  • 1.34e4
  • 1.35e4
  • 1.41e4
  • 1.46e4
  • 1.48e4
  • 1.51e4
73.88
  • 73.88
  • 70.56
  • 67.57
  • 67.04
  • 64.74
  • 64.35
  • 63.06
  • 61.50
  • 58.44
  • 55.24
  • 54.83
  • 52.77
  • 51.12
  • 50.54
  • 49.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
7.91e3
  • 7.91e3
  • 8.96e3
  • 1.03e4
73.52
  • 73.52
  • 69.98
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.10e3
  • 8.10e3
  • 8.60e3
  • 8.91e3
72.87
  • 72.87
  • 71.19
  • 70.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000026Segmentation:14-19 somites
8.30e3
  • 8.30e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.65e3
  • 8.65e3
  • 1.05e4
71.04
  • 71.04
  • 64.98
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
8.95e3
  • 8.95e3
  • 1.34e4
  • 1.43e4
  • 1.49e4
70.02
  • 70.02
  • 55.05
  • 52.28
  • 50.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
9.19e3
  • 9.19e3
  • 9.19e3
  • 9.96e3
  • 9.96e3
  • 1.10e4
  • 1.14e4
  • 1.14e4
  • 1.16e4
  • 1.17e4
69.22
  • 69.22
  • 69.22
  • 66.67
  • 66.65
  • 63.32
  • 61.75
  • 61.75
  • 61.09
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
9.60e3
  • 9.60e3
67.85
  • 67.85
AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.60e3
  • 9.60e3
  • 9.60e3
  • 1.08e4
  • 1.08e4
  • 1.08e4
67.85
  • 67.85
  • 67.85
  • 63.87
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.60e3
  • 9.60e3
  • 1.15e4
  • 1.15e4
67.85
  • 67.85
  • 61.53
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.60e3
  • 9.60e3
  • 1.26e4
  • 1.26e4
67.85
  • 67.85
  • 57.68
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0015238pineal complex
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.02e4
  • 1.02e4
  • 1.07e4
  • 1.09e4
  • 1.12e4
  • 1.12e4
65.89
  • 65.89
  • 64.26
  • 63.61
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
65.61
  • 65.61
  • 65.61
  • 62.48
  • 62.48
  • 61.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.04e4
  • 1.04e4
  • 1.09e4
  • 1.23e4
  • 1.25e4
  • 1.31e4
  • 1.36e4
65.19
  • 65.19
  • 63.61
  • 58.80
  • 58.31
  • 56.22
  • 54.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.04e4
  • 1.04e4
  • 1.05e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
65.19
  • 65.19
  • 64.98
  • 64.98
  • 64.26
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0015241parapineal organ
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.15e4
  • 1.15e4
  • 1.21e4
61.53
  • 61.53
  • 59.36
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
56.08
  • 56.08
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
1.39e4
  • 1.39e4
53.46
  • 53.46
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.47e4
  • 1.47e4
50.77
  • 50.77
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.53e4
  • 1.53e4
48.69
  • 48.69
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.58e4
  • 1.58e4
47.10
  • 47.10
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.70
  • 45.70
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.90e4
  • 1.90e4
36.53
  • 36.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
27.88
  • 27.88
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.64
  • 23.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Deuterostomia2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069866.

Cross-references

EnsemblENSDARG00000069866 (sox1a)
ZFINZDB-GENE-040718-186 (sox1a)
EMBLAB242327, BC076326, BC096992, CR392332
Uniprot/SWISSPROTQ6DGL6, SOX1A_DANRE

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