D. rerio Gene: cldna - ENSDARG00000069888 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069888
Namecldna
Descriptionclaudin a [Source:ZFIN;Acc:ZDB-GENE-010328-1]
OrganismDanio rerio (zebrafish)
Synonym(s)fb99d09, wu:fb99d09
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
343
  • 343
98.86
  • 98.86
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.92e3
  • 1.92e3
  • 1.30e4
93.58
  • 93.58
  • 56.42
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.74e3
  • 5.74e3
80.78
  • 80.78
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
7.97e3
  • 7.97e3
  • 1.27e4
  • 1.34e4
  • 1.42e4
73.31
  • 73.31
  • 57.47
  • 54.97
  • 52.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
8.03e3
  • 8.03e3
  • 1.09e4
  • 1.18e4
  • 1.47e4
  • 1.61e4
73.12
  • 73.12
  • 63.34
  • 60.53
  • 50.92
  • 46.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.66e3
  • 8.66e3
  • 1.23e4
71.01
  • 71.01
  • 58.74
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.87e3
  • 8.87e3
70.31
  • 70.31
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.94e3
  • 9.94e3
66.73
  • 66.73
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.30
  • 63.30
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.79
  • 62.79
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.12e4
  • 1.12e4
  • 1.49e4
62.49
  • 62.49
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.18e4
  • 1.18e4
60.56
  • 60.56
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.31e4
  • 1.31e4
  • 1.31e4
56.27
  • 56.27
  • 56.00
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.92
  • 54.92
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.66
  • 52.66
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
  • 1.50e4
51.80
  • 51.80
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.44e4
  • 1.44e4
51.77
  • 51.77
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:0002280otolith
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.66e4
  • 1.66e4
  • 1.71e4
44.26
  • 44.26
  • 42.85
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.76e4
  • 1.76e4
41.07
  • 41.07
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.31
  • 29.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Neopterygii3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069888.

Cross-references

EnsemblENSDARG00000069888 (cldna)
ZFINZDB-GENE-010328-1 (cldna)
EMBLBC065445, CR382327
Uniprot/SPTREMBLQ6P0U4, Q6P0U4_DANRE

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