D. rerio Gene: popdc2 - ENSDARG00000069922 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069922
Namepopdc2
Descriptionpopeye domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060518-2]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
322
  • 322
  • 1.20e4
98.91625
  • 98.91625
  • 59.59010
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
84.85458
  • 84.85458
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.79e3
  • 4.79e3
  • 6.36e3
  • 6.54e3
  • 9.47e3
  • 1.28e4
83.82370
  • 83.82370
  • 78.49357
  • 77.89860
  • 67.99240
  • 56.76471
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001601extra-ocular muscle
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
75.00167
  • 75.00167
AEIR
  • AEIR
UBERON:0002376cranial muscle
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
75.00167
  • 75.00167
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
9.86e3
  • 9.86e3
66.66328
  • 66.66328
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
59.98986
  • 59.98986
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
  • 1.48e4
56.24156
  • 56.24156
  • 49.99493
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
  • 1.38e4
54.97294
  • 54.97294
  • 53.40601
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
54.97294
  • 54.97294
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.43192
  • 54.43192
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
1.38e4
  • 1.38e4
53.31307
  • 53.31307
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
52.51889
  • 52.51889
AEIR
  • AEIR
UBERON:2000608ventral transverse
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
  • 1.48e4
49.99493
  • 49.99493
  • 49.98986
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
45.84354
  • 45.84354
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.38688
  • 41.38688
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.61143
  • 40.61143
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
38.66794
  • 38.66794
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.54018
  • 32.54018
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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