D. rerio Gene: itga6b - ENSDARG00000069946 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069946
Nameitga6b
Descriptionintegrin, alpha 6b [Source:ZFIN;Acc:ZDB-GENE-050320-5]
OrganismDanio rerio (zebrafish)
Synonym(s)fl20e08, si:dkey-18j14.1, wu:fl20e08, zgc:113088
Orthologs(s)7 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
267
  • 267
99.11
  • 99.11
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
311
  • 311
  • 7.94e3
98.96
  • 98.96
  • 73.42
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
814
  • 814
  • 3.51e3
97.28
  • 97.28
  • 88.26
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.82e3
  • 2.82e3
90.56
  • 90.56
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
4.15e3
  • 4.15e3
  • 5.35e3
  • 5.51e3
  • 5.54e3
  • 6.30e3
  • 1.19e4
  • 1.20e4
  • 1.23e4
  • 1.48e4
  • 1.52e4
86.11
  • 86.11
  • 82.08
  • 81.54
  • 81.47
  • 78.91
  • 60.12
  • 59.74
  • 58.90
  • 50.36
  • 48.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.84
  • 85.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.08
  • 85.08
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.69e3
  • 4.69e3
84.30
  • 84.30
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.29
  • 83.29
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.97e3
  • 7.97e3
  • 1.04e4
  • 1.52e4
73.31
  • 73.31
  • 65.28
  • 49.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.37e3
  • 8.37e3
71.99
  • 71.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.65e3
  • 8.65e3
71.05
  • 71.05
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
9.43e3
  • 9.43e3
  • 1.72e4
  • 1.75e4
68.41
  • 68.41
  • 42.50
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.58e3
  • 9.58e3
67.93
  • 67.93
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.66e3
  • 9.66e3
67.65
  • 67.65
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.09e4
  • 1.09e4
  • 1.11e4
63.39
  • 63.39
  • 62.96
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.43
  • 62.43
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.14e4
  • 1.14e4
61.95
  • 61.95
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
  • 1.17e4
61.84
  • 61.84
  • 60.66
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.46
  • 61.46
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.29e4
  • 1.29e4
56.82
  • 56.82
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.89
  • 53.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.80
  • 53.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
1.39e4
  • 1.39e4
  • 1.39e4
  • 1.40e4
  • 1.41e4
  • 1.45e4
  • 1.46e4
  • 1.48e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
  • 1.53e4
  • 1.56e4
  • 1.60e4
  • 1.66e4
53.41
  • 53.41
  • 53.38
  • 53.22
  • 52.74
  • 51.56
  • 51.15
  • 50.57
  • 50.20
  • 49.95
  • 49.71
  • 48.74
  • 47.68
  • 46.34
  • 44.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.65e4
48.39
  • 48.39
  • 44.78
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.11
  • 48.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.35
  • 45.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e4
  • 1.66e4
44.41
  • 44.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.64
  • 42.64
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
41.69
  • 41.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000069946.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069946.

Cross-references

EnsemblENSDARG00000069946 (itga6b)
ZFINZDB-GENE-050320-5 (itga6b)
EMBLBX548015
Uniprot/SPTREMBLB8A5K2, B8A5K2_DANRE, F8W3N5, F8W3N5_DANRE, F8W4L2, F8W4L2_DANRE

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