D. rerio Gene: alox5b.3 - ENSDARG00000069966 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000069966
Namealox5b.3
Descriptionarachidonate 5-lipoxygenase b, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-330]
OrganismDanio rerio (zebrafish)
Synonym(s)cb171, sb:cb171, zgc:110251
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
359
  • 359
  • 450
  • 623
  • 851
  • 1.01e3
  • 1.36e3
98.80
  • 98.80
  • 98.49
  • 97.92
  • 97.15
  • 96.62
  • 95.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
512
  • 512
  • 1.14e3
  • 2.95e3
  • 1.35e4
  • 1.36e4
98.29
  • 98.29
  • 96.18
  • 90.11
  • 54.88
  • 54.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
878
  • 878
  • 1.71e3
  • 2.38e3
  • 3.24e3
  • 3.86e3
  • 4.09e3
  • 1.02e4
  • 1.29e4
  • 1.40e4
  • 1.42e4
  • 1.44e4
  • 1.45e4
  • 1.50e4
  • 1.50e4
  • 1.56e4
  • 1.63e4
  • 1.65e4
  • 1.69e4
97.06
  • 97.06
  • 94.27
  • 92.02
  • 89.16
  • 87.07
  • 86.31
  • 65.99
  • 56.82
  • 53.03
  • 52.44
  • 51.82
  • 51.51
  • 49.92
  • 49.81
  • 47.89
  • 45.44
  • 44.89
  • 43.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.81e3
  • 1.81e3
93.95
  • 93.95
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.77e3
  • 3.77e3
87.37
  • 87.37
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.93e3
  • 3.93e3
86.84
  • 86.84
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
84.95
  • 84.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.71e3
  • 4.71e3
84.25
  • 84.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.94e3
  • 5.94e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.21e3
  • 6.21e3
79.21
  • 79.21
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.33e3
  • 7.33e3
75.45
  • 75.45
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
8.17e3
  • 8.17e3
  • 1.06e4
  • 1.47e4
  • 1.86e4
  • 1.88e4
  • 2.07e4
  • 2.16e4
  • 2.23e4
72.65
  • 72.65
  • 64.44
  • 50.66
  • 37.78
  • 37.16
  • 30.59
  • 27.70
  • 25.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.29e3
  • 9.29e3
68.90
  • 68.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.66e3
  • 9.66e3
67.66
  • 67.66
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.68
  • 64.68
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.20e4
  • 1.20e4
  • 1.67e4
59.94
  • 59.94
  • 44.03
AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.21e4
  • 1.21e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
59.36
  • 59.36
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 56.65
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007383enveloping layer of ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
59.08
  • 59.08
  • 59.08
  • 58.32
  • 54.99
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
  • 1.62e4
58.68
  • 58.68
  • 45.70
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
  • 1.29e4
  • 1.39e4
  • 1.41e4
56.65
  • 56.65
  • 56.65
  • 53.31
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.04
  • 55.04
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
  • 1.98e4
53.92
  • 53.92
  • 33.80
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.53
  • 53.53
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.11
  • 47.11
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.67e4
  • 1.67e4
44.07
  • 44.07
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
  • 1.96e4
43.84
  • 43.84
  • 34.52
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.76e4
  • 1.76e4
  • 1.98e4
41.16
  • 41.16
  • 33.72
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.05
  • 35.05
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.24
  • 31.24
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.21
  • 29.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000069966.

Cross-references

EnsemblENSDARG00000069966 (alox5b.3)
ZFINZDB-GENE-050522-330 (alox5b.3)
EMBLCU469509
Uniprot/SPTREMBLF1R442, F1R442_DANRE

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