D. rerio Gene: cart4 - ENSDARG00000070142 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070142
Namecart4
Descriptioncocaine- and amphetamine-regulated transcript 4 [Source:ZFIN;Acc:ZDB-GENE-060503-863]
OrganismDanio rerio (zebrafish)
Synonym(s)cart1, cart2a, cart2b, cart3, si:ch211-191i18.3, si:ch211-191i18.3gn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.98e3
  • 1.98e3
  • 5.32e3
93.37
  • 93.37
  • 82.17
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.16
  • 80.16
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
  • 1.35e4
78.59
  • 78.59
  • 54.89
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
6.95e3
  • 6.95e3
76.72
  • 76.72
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.02e3
  • 9.02e3
  • 1.14e4
69.80
  • 69.80
  • 61.80
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.04e4
  • 1.04e4
  • 1.25e4
  • 1.31e4
  • 1.37e4
  • 1.90e4
65.05
  • 65.05
  • 58.13
  • 56.30
  • 54.05
  • 36.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.12e4
62.50
  • 62.50
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
  • 1.36e4
  • 1.49e4
60.70
  • 60.70
  • 54.53
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.30e4
  • 1.34e4
57.11
  • 57.11
  • 56.49
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.29e4
  • 1.29e4
56.97
  • 56.97
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.40e4
  • 1.40e4
  • 1.49e4
53.10
  • 53.10
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.65e4
  • 1.65e4
44.70
  • 44.70
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
36.98
  • 36.98
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.34e4
  • 2.34e4
21.81
  • 21.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000070142 (cart4)
ZFINZDB-GENE-060503-863 (cart4)
EMBLCR936363, GU057836, KM655651
Uniprot/SPTREMBLQ1L893, Q1L893_DANRE

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