D. rerio Gene: tnfrsf1b - ENSDARG00000070165 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070165
Nametnfrsf1b
Descriptiontumor necrosis factor receptor superfamily, member 1B [Source:ZFIN;Acc:ZDB-GENE-070410-133]
OrganismDanio rerio (zebrafish)
Synonym(s)rank, zgc:163064

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000016Blastula:30%-epiboly
1.66e3
  • 1.66e3
  • 6.97e3
  • 7.47e3
  • 8.96e3
94.45
  • 94.45
  • 76.66
  • 74.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.20
  • 81.20
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.71
  • 80.71
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.19e3
  • 6.19e3
  • 6.61e3
79.27
  • 79.27
  • 77.87
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.73e3
  • 6.73e3
77.45
  • 77.45
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.60e3
  • 7.60e3
74.57
  • 74.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.65e3
  • 7.65e3
74.37
  • 74.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.05
  • 74.05
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.94
  • 71.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.79e3
  • 8.79e3
  • 1.25e4
70.57
  • 70.57
  • 58.11
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.53e3
  • 9.53e3
68.09
  • 68.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.82e3
  • 9.82e3
67.14
  • 67.14
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000034Hatching:Pec-fin
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.95
  • 65.95
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.82
  • 62.82
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.36e4
62.50
  • 62.50
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.43
  • 62.43
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.97
  • 59.97
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0003061blood island
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.32e4
  • 1.32e4
  • 2.00e4
55.65
  • 55.65
  • 32.91
AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.40e4
  • 1.40e4
53.23
  • 53.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.40e4
  • 1.40e4
  • 1.58e4
53.12
  • 53.12
  • 47.07
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.43e4
  • 1.43e4
  • 1.45e4
  • 1.57e4
  • 1.81e4
  • 1.89e4
52.16
  • 52.16
  • 51.46
  • 47.53
  • 39.54
  • 36.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.39
  • 50.39
AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2005029rostral blood island
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.65e4
  • 1.65e4
  • 1.70e4
44.61
  • 44.61
  • 43.21
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.82
  • 41.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.44
  • 40.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000070165 (tnfrsf1b)
ZFINZDB-GENE-070410-133 (tnfrsf1b)
EMBLCR848022, CR926132
Uniprot/SPTREMBLF1R0Z4, F1R0Z4_DANRE, F1RAS9, F1RAS9_DANRE

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