D. rerio Gene: pou3f2a - ENSDARG00000070220 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070220
Namepou3f2a
DescriptionPOU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
OrganismDanio rerio (zebrafish)
Synonym(s)brn-1.2, brn1.2, brn1.2 {eco:0000313|embl:aai29153.1,gn eco:0000313|zfin:zdb-gene-980526-139}, id:ibd5088

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
  • 2.08e4
82.30
  • 82.30
  • 30.49
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.99e3
  • 6.99e3
76.59
  • 76.59
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.18e3
  • 7.18e3
  • 1.34e4
75.97
  • 75.97
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 1.49e4
74.99
  • 74.99
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
7.58e3
  • 7.58e3
  • 8.15e3
  • 9.48e3
  • 9.86e3
  • 1.26e4
74.61
  • 74.61
  • 72.71
  • 68.27
  • 66.98
  • 57.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.07e3
  • 9.07e3
69.62
  • 69.62
AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.05e4
  • 1.05e4
  • 1.25e4
64.98
  • 64.98
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.17e4
  • 1.17e4
60.68
  • 60.68
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.34e4
57.11
  • 57.11
  • 54.97
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
  • 1.41e4
56.22
  • 56.22
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000022Gastrula:Bud
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.39e4
  • 1.39e4
  • 1.42e4
53.31
  • 53.31
  • 52.60
AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:2001343telencephalon diencephalon boundary
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.64e4
  • 1.64e4
45.13
  • 45.13
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.88
  • 34.88
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.44
  • 34.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000070220 (pou3f2a)
ZFINZDB-GENE-980526-139 (pou3f2a)
EMBLBC129152, FP085435
Uniprot/SPTREMBLA2VD21, A2VD21_DANRE

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