Gene: zgc:173652 - ENSDARG00000070280 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000070280
Name	zgc:173652
Description	zgc:173652 [Source:ZFIN;Acc:ZDB-GENE-070822-28]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-261m9.18,gn zgc:110434, withdrawn: zgc:110434
Orthologs(s)	221 orthologs
Paralog(s)	35 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	9.48e3 9.48e3 1.03e4	68.27 68.27 65.65	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.05e4 1.05e4	64.68 64.68	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.19e4 1.19e4 1.42e4	60.00 60.00 52.37	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.24e4 1.24e4	58.55 58.55	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.33e4 1.33e4	55.54 55.54	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.38e4 1.38e4	53.94 53.94	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.45e4 1.45e4	51.51 51.51	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.47e4 1.47e4	50.66 50.66	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	1.56e4 1.56e4 1.76e4 2.09e4 2.12e4 2.27e4	47.76 47.76 41.12 29.92 28.89 24.10	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.56e4 1.56e4 2.04e4	47.73 47.73 31.69	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 1 stage ZFS:0000036Larval:Day 4	1.69e4 1.69e4	43.40 43.40	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.79e4 1.79e4	40.12 40.12	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.85e4 1.85e4	38.19 38.19	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.94e4 1.94e4	35.00 35.00	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.07e4 2.07e4	30.77 30.77	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.20e4 2.20e4	26.28 26.28	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	221 genes ENSG00000164508 HIST1H2AA ENSG00000180573 HIST1H2AC ENSG00000181218 HIST3H2A ENSG00000184260 HIST2H2AC ENSG00000184270 HIST2H2AB ENSG00000188486 H2AFX ENSG00000196747 HIST1H2AI ENSG00000196787 HIST1H2AG ENSG00000203812 HIST2H2AA3 ENSG00000246705 H2AFJ ENSG00000272196 HIST2H2AA4 ENSG00000274997 HIST1H2AH ENSG00000275221 HIST1H2AK ENSG00000276368 HIST1H2AJ ENSG00000276903 HIST1H2AL ENSG00000277075 HIST1H2AE ENSG00000278463 HIST1H2AB ENSG00000278677 HIST1H2AM ENSG00000282988 RP1-34B20.21 ENSMUSG00000049932 H2afx ENSMUSG00000060032 H2afj ENSMUSG00000060081 Hist1h2aa ENSMUSG00000061615 Hist1h2ab ENSMUSG00000061991 Hist1h2af ENSMUSG00000063021 Hist1h2ak ENSMUSG00000063689 Hist2h2ab ENSMUSG00000063954 Hist2h2aa2 ENSMUSG00000064220 Hist2h2aa1 ENSMUSG00000068855 Hist2h2ac ENSMUSG00000069270 Hist1h2ac ENSMUSG00000069272 Hist1h2ae ENSMUSG00000069301 Hist1h2ag ENSMUSG00000069302 Hist1h2ah ENSMUSG00000069309 Hist1h2an ENSMUSG00000071478 Hist1h2ad ENSMUSG00000071516 Hist1h2ai ENSMUSG00000078851 Hist3h2a ENSMUSG00000094248 Hist1h2ao ENSMUSG00000094777 Hist1h2ap ENSPTRG00000004369 H2AFX ENSPTRG00000004723 H2AFJ ENSPTRG00000017789 HIST1H2AA ENSPTRG00000029801 ENSGGOG00000001439 ENSGGOG00000002953 HIST2H2AC ENSGGOG00000002955 HIST2H2AB ENSGGOG00000008066 H2AFX ENSGGOG00000022790 ENSGGOG00000023035 HIST3H2A ENSGGOG00000024346 HIST1H2AD ENSGGOG00000026560 H2AFJ ENSGGOG00000026785 HIST1H2AJ ENSGGOG00000026792 HIST1H2AB ENSGGOG00000028019 HIST2H2AA3 ENSMMUG00000001438 ENSMMUG00000001444 ENSMMUG00000018013 H2AFJ ENSMMUG00000029900 HIST1H2AJ ENSMMUG00000029916 HIST1H2AB ENSMMUG00000029923 HIST2H2AA3 ENSMMUG00000030889 H2AFX ENSMMUG00000031473 HIST1H2AA ENSMMUG00000031509 HIST3H2A ENSMMUG00000031743 HIST2H2AB ENSMMUG00000031744 HIST2H2AC ENSMMUG00000032625 HIST2H2AA4 ENSRNOG00000010386 H2afx ENSRNOG00000022146 Hist1h2af ENSRNOG00000030736 Hist2h2ac ENSRNOG00000033045 H2afj ENSRNOG00000048122 Hist1h2aa ENSRNOG00000048317 Hist2h2ab ENSRNOG00000051758 LOC100910554 ENSRNOG00000052555 Hist2h2aa2 ENSRNOG00000052594 Hist1h2ak ENSRNOG00000052845 LOC680322 ENSRNOG00000059748 LOC684773 ENSRNOG00000060492 LOC103690190 ENSBTAG00000024180 HIST1H2AD ENSBTAG00000030503 H2AFJ ENSBTAG00000031468 ENSBTAG00000031738 ENSBTAG00000031768 ENSBTAG00000031771 ENSBTAG00000031888 HIST1H2AJ ENSBTAG00000034949 ENSBTAG00000037964 HIST3H2A ENSBTAG00000038047 H2AFX ENSBTAG00000038476 HIST2H2AB ENSBTAG00000039657 HIST1H2AC ENSBTAG00000040098 ENSBTAG00000046003 HIST2H2AC ENSECAG00000003153 HIST1H2AH ENSECAG00000003763 H2AFJ ENSECAG00000004710 ENSECAG00000004965 HIST1H2AD ENSECAG00000005679 ENSECAG00000006041 HIST3H2A ENSECAG00000006985 HIST2H2AA3 ENSECAG00000007193 HIST1H2AE ENSECAG00000007457 ENSECAG00000007834 HIST2H2AB ENSECAG00000007937 HIST2H2AA4 ENSOCUG00000011271 HIST1H2AA ENSOCUG00000021306 HIST1H2AB ENSOCUG00000024878 HIST1H2AC ENSOCUG00000025069 ENSOCUG00000025918 HIST2H2AA4 ENSOCUG00000026011 ENSOCUG00000026771 ENSOCUG00000026955 HIST1H2AJ ENSOCUG00000027663 H2AFJ ENSCAFG00000011574 HIST2H2AC ENSCAFG00000012332 H2AFX ENSCAFG00000012984 H2AFJ ENSCAFG00000024315 HIST1H2AA ENSCAFG00000024329 HIST3H2A ENSCAFG00000028830 ENSCAFG00000029759 ENSCAFG00000030106 HIST2H2AA4 ENSCAFG00000030507 ENSCAFG00000030712 HIST1H2AE ENSCAFG00000031737 ENSCAFG00000031749 ENSCAFG00000031860 HIST2H2AA3 ENSCAFG00000032128 ENSCAFG00000032157 ENSFCAG00000010276 ENSFCAG00000021976 ENSFCAG00000023555 ENSFCAG00000024530 HIST3H2A ENSFCAG00000024637 ENSFCAG00000024806 HIST2H2AC ENSFCAG00000025213 HIST1H2AC ENSFCAG00000025459 HIST1H2AB ENSFCAG00000025891 ENSFCAG00000026932 HIST2H2AA4 ENSFCAG00000027552 HIST1H2AA ENSFCAG00000028667 HIST2H2AB ENSFCAG00000030442 ENSFCAG00000031712 H2AFJ ENSCPOG00000006474 H2AFX ENSCPOG00000020437 HIST2H2AB ENSCPOG00000020580 ENSCPOG00000021011 HIST1H2AA ENSCPOG00000021529 H2AFJ ENSCPOG00000025235 ENSCPOG00000026571 ENSEEUG00000000362 ENSEEUG00000002740 ENSEEUG00000004792 HIST2H2AC ENSEEUG00000004851 HIST2H2AB ENSEEUG00000005617 ENSEEUG00000007204 H2AFJ ENSEEUG00000008251 HIST2H2AA4 ENSEEUG00000008995 ENSEEUG00000009397 ENSEEUG00000014240 HIST3H2A ENSEEUG00000015829 HIST1H2AC ENSMODG00000008167 HIST2H2AC ENSMODG00000008631 ENSMODG00000008668 ENSMODG00000008698 ENSMODG00000018764 H2AFX ENSMODG00000023676 ENSMODG00000028940 HIST2H2AB ENSOANG00000000158 ENSOANG00000000168 ENSOANG00000000170 ENSOANG00000000175 ENSOANG00000000179 ENSOANG00000000181 ENSOANG00000000186 ENSOANG00000000191 ENSOANG00000000196 ENSOANG00000000198 HIST1H2AM ENSOANG00000000200 ENSOANG00000000215 ENSOANG00000000220 HIST1H2AG ENSOANG00000000224 ENSOANG00000004508 ENSOANG00000005468 ENSOANG00000007257 H2AFX ENSOANG00000008219 ENSOANG00000011250 ENSOANG00000011436 ENSOANG00000012535 ENSOANG00000012785 ENSOANG00000013074 ENSOANG00000014246 ENSOANG00000014860 ENSOANG00000022757 ENSOANG00000022760 ENSOANG00000022765 ENSGALG00000024338 ENSGALG00000026449 ENSGALG00000027315 H2A-VIII ENSACAG00000003365 ENSACAG00000004700 ENSACAG00000006010 ENSACAG00000011601 ENSACAG00000015302 HIST2H2AB ENSACAG00000015308 ENSACAG00000017534 ENSXETG00000013777 ENSXETG00000016179 h2afj ENSXETG00000021560 h2afx ENSXETG00000021561 ENSXETG00000025391 hist1h2ad ENSXETG00000025393 ENSXETG00000025687 ENSXETG00000026675 hist1h2aj ENSXETG00000027849 hist2h2ab ENSXETG00000030660 ENSXETG00000031087 ENSXETG00000031750 hist1h2ad ENSXETG00000031790 ENSXETG00000033195 hist1h2ah ENSXETG00000033684 ENSXETG00000033699 ENSXETG00000033751	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000070280.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	31 genes ENSDARG00000029406 h2afx ENSDARG00000051732 zgc:110434 ENSDARG00000051734 si:ch211-113a14.16 ENSDARG00000051736 zgc:114037 ENSDARG00000051770 zgc:110434 ENSDARG00000051775 zgc:110434 ENSDARG00000068928 si:dkey-108k21.26 ENSDARG00000068995 HIST2H2AB (1 to many) ENSDARG00000070265 zgc:110434 ENSDARG00000070286 si:ch211-113a14.19 ENSDARG00000074260 FP236812.1 ENSDARG00000074937 si:dkey-261m9.15 ENSDARG00000075220 FP236812.2 ENSDARG00000075379 si:dkey-261m9.11 ENSDARG00000086304 si:ch73-36p18.5 ENSDARG00000086552 HIST2H2AB (1 to many) ENSDARG00000086604 si:ch211-113a14.25 ENSDARG00000088686 HIST2H2AB (1 to many) ENSDARG00000090182 zgc:110434 ENSDARG00000091205 FP236812.5 ENSDARG00000098595 HIST2H2AB (1 to many) ENSDARG00000099123 si:dkey-23a13.14 ENSDARG00000100024 HIST2H2AB (1 to many) ENSDARG00000100279 HIST2H2AB (1 to many) ENSDARG00000100906 HIST2H2AB (1 to many) ENSDARG00000103015 zgc:110434 ENSDARG00000105314 si:dkey-23a13.6 ENSDARG00000105366 si:ch1073-159d7.10 ENSDARG00000105400 si:ch73-368j24.14 ENSDARG00000105444 HIST2H2AB (1 to many) ENSDARG00000105478 si:ch1073-153i20.5	Compare expression	[+]
Eukaryota	35 genes ENSDARG00000029406 h2afx ENSDARG00000051732 zgc:110434 ENSDARG00000051734 si:ch211-113a14.16 ENSDARG00000051736 zgc:114037 ENSDARG00000051770 zgc:110434 ENSDARG00000051775 zgc:110434 ENSDARG00000068820 h2afva ENSDARG00000068928 si:dkey-108k21.26 ENSDARG00000068995 HIST2H2AB (1 to many) ENSDARG00000070265 zgc:110434 ENSDARG00000070286 si:ch211-113a14.19 ENSDARG00000074260 FP236812.1 ENSDARG00000074937 si:dkey-261m9.15 ENSDARG00000075220 FP236812.2 ENSDARG00000075379 si:dkey-261m9.11 ENSDARG00000086304 si:ch73-36p18.5 ENSDARG00000086552 HIST2H2AB (1 to many) ENSDARG00000086604 si:ch211-113a14.25 ENSDARG00000087897 h2afy2 ENSDARG00000088686 HIST2H2AB (1 to many) ENSDARG00000090182 zgc:110434 ENSDARG00000091205 FP236812.5 ENSDARG00000098595 HIST2H2AB (1 to many) ENSDARG00000098739 phc2b ENSDARG00000099123 si:dkey-23a13.14 ENSDARG00000099214 h2afvb ENSDARG00000100024 HIST2H2AB (1 to many) ENSDARG00000100279 HIST2H2AB (1 to many) ENSDARG00000100906 HIST2H2AB (1 to many) ENSDARG00000103015 zgc:110434 ENSDARG00000105314 si:dkey-23a13.6 ENSDARG00000105366 si:ch1073-159d7.10 ENSDARG00000105400 si:ch73-368j24.14 ENSDARG00000105444 HIST2H2AB (1 to many) ENSDARG00000105478 si:ch1073-153i20.5	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000070280.

Cross-references

Ensembl	ENSDARG00000070280 (zgc:173652)
ZFIN	ZDB-GENE-050522-93 (zgc:110434), ZDB-GENE-070822-28 (zgc:173652)
EMBL	BC093343, BC095260, BC150436, BC165493, CR354435, CR762436, CU302436
Uniprot/SPTREMBL	Q561S9, Q561S9_DANRE