D. rerio Gene: zgc:173652 - ENSDARG00000070280 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070280
Namezgc:173652
Descriptionzgc:173652 [Source:ZFIN;Acc:ZDB-GENE-070822-28]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-261m9.18,gn zgc:110434, withdrawn: zgc:110434
Orthologs(s)221 orthologs
Paralog(s)35 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
9.48e3
  • 9.48e3
  • 1.03e4
68.27
  • 68.27
  • 65.65
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
64.68
  • 64.68
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.19e4
  • 1.19e4
  • 1.42e4
60.00
  • 60.00
  • 52.37
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.55
  • 58.55
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.54
  • 55.54
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.94
  • 53.94
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.45e4
  • 1.45e4
51.51
  • 51.51
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.47e4
  • 1.47e4
50.66
  • 50.66
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.56e4
  • 1.56e4
  • 1.76e4
  • 2.09e4
  • 2.12e4
  • 2.27e4
47.76
  • 47.76
  • 41.12
  • 29.92
  • 28.89
  • 24.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.56e4
  • 1.56e4
  • 2.04e4
47.73
  • 47.73
  • 31.69
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.69e4
  • 1.69e4
43.40
  • 43.40
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.12
  • 40.12
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.19
  • 38.19
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.00
  • 35.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.77
  • 30.77
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.28
  • 26.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species221 genesCompare expression

Orthology information comes from OMA : ENSDARG00000070280.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi31 genesCompare expression
Eukaryota35 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000070280.

Cross-references

EnsemblENSDARG00000070280 (zgc:173652)
ZFINZDB-GENE-050522-93 (zgc:110434), ZDB-GENE-070822-28 (zgc:173652)
EMBLBC093343, BC095260, BC150436, BC165493, CR354435, CR762436, CU302436
Uniprot/SPTREMBLQ561S9, Q561S9_DANRE

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