D. rerio Gene: zgc:173552 - ENSDARG00000070287 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070287
Namezgc:173552
Descriptionzgc:173552 [Source:ZFIN;Acc:ZDB-GENE-080220-24]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-113a14.14,gn si:ch211-113a14.23,gn si:ch211-113a14.27
Orthologs(s)185 orthologs
Paralog(s)31 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.96e3
  • 5.96e3
  • 1.14e4
80.05
  • 80.05
  • 61.73
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.15e3
  • 8.15e3
72.70
  • 72.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.25e3
  • 8.25e3
  • 1.38e4
72.39
  • 72.39
  • 53.73
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.42e4
  • 1.42e4
52.41
  • 52.41
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.31
  • 47.31
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
  • 2.59e4
46.36
  • 46.36
  • 13.13
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.65e4
  • 1.65e4
  • 1.93e4
  • 1.95e4
  • 2.68e4
44.80
  • 44.80
  • 35.21
  • 34.73
  • 10.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.85
  • 40.85
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.80e4
  • 1.80e4
  • 1.96e4
39.60
  • 39.60
  • 34.46
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.45
  • 35.45
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.70
  • 31.70
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.31
  • 28.31
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.54e4
  • 2.54e4
14.89
  • 14.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species125 genesCompare expression
Bilateria26 species185 genesCompare expression

Orthology information comes from OMA : ENSDARG00000070287.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi24 genesCompare expression
Vertebrata26 genesCompare expression
Deuterostomia31 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000070287.

Cross-references

EnsemblENSDARG00000070287 (zgc:173552)
ZFINZDB-GENE-080220-24 (zgc:173552)
EMBLBC154136, CR354435, FP236812
Uniprot/SPTREMBLA8KBJ5, A8KBJ5_DANRE

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