D. rerio Gene: hoxc4a - ENSDARG00000070338 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070338
Namehoxc4a
Descriptionhomeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
OrganismDanio rerio (zebrafish)
Synonym(s)a2be61, hoxc4, o57367, q4pr91, q561x5, z-96, zgc:110513
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
6.41e3
  • 6.41e3
  • 6.80e3
  • 7.53e3
  • 8.42e3
  • 8.93e3
  • 1.05e4
  • 1.36e4
  • 1.36e4
  • 1.45e4
  • 1.68e4
78.55
  • 78.55
  • 77.23
  • 74.78
  • 71.82
  • 70.08
  • 64.99
  • 54.57
  • 54.52
  • 51.45
  • 43.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.73e3
  • 7.73e3
  • 9.87e3
  • 1.16e4
74.13
  • 74.13
  • 66.95
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
8.53e3
  • 8.53e3
  • 1.01e4
  • 1.19e4
  • 1.35e4
  • 1.44e4
  • 1.47e4
  • 1.56e4
  • 1.66e4
71.43
  • 71.43
  • 66.04
  • 60.00
  • 54.94
  • 51.91
  • 50.90
  • 47.93
  • 44.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
  • 1.10e4
66.65
  • 66.65
  • 65.61
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
  • 1.33e4
66.53
  • 66.53
  • 55.44
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.02e4
  • 1.02e4
  • 1.09e4
  • 1.17e4
  • 1.18e4
  • 1.23e4
  • 1.27e4
  • 1.27e4
65.89
  • 65.89
  • 63.61
  • 60.68
  • 60.50
  • 58.80
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
  • 2.25e4
64.90
  • 64.90
  • 24.70
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
1.07e4
  • 1.07e4
64.27
  • 64.27
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
63.14
  • 63.14
  • 63.14
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.14e4
  • 1.16e4
  • 1.25e4
  • 1.25e4
62.49
  • 62.49
  • 61.88
  • 61.10
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.15e4
  • 1.15e4
  • 1.16e4
  • 1.17e4
  • 1.17e4
  • 1.21e4
  • 1.21e4
  • 1.23e4
61.53
  • 61.53
  • 61.09
  • 60.70
  • 60.70
  • 59.36
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.17e4
  • 1.17e4
  • 1.27e4
  • 1.27e4
60.84
  • 60.84
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:0006860swim bladder
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000034Hatching:Pec-fin
1.24e4
  • 1.24e4
  • 1.25e4
  • 1.49e4
58.33
  • 58.33
  • 58.09
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.47
  • 54.47
AEIR
  • AEIR
UBERON:0006859swim bladder bud
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.50e4
  • 1.50e4
  • 1.75e4
49.89
  • 49.89
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.59e4
  • 1.59e4
46.65
  • 46.65
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.96
  • 44.96
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.93
  • 35.93
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.89
  • 23.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000070338 (hoxc4a)
ZFINZDB-GENE-990415-112 (hoxc4a)
EMBLAF071264, BC092923, BC164612, BX005254, DQ060552, Y14545
Uniprot/SPTREMBLB2GQ57, B2GQ57_DANRE
Uniprot/SWISSPROTHXC4A_DANRE, Q9PWM3

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