D. rerio Gene: hoxc8a - ENSDARG00000070346 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070346
Namehoxc8a
Descriptionhomeobox C8a [Source:ZFIN;Acc:ZDB-GENE-990415-114]
OrganismDanio rerio (zebrafish)
Synonym(s)a2be64, cb341, hoxc8, o57369, q4pr88, z-179, zgc:91832
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
414
  • 414
  • 1.24e4
  • 1.49e4
98.62
  • 98.62
  • 58.33
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
91.72
  • 91.72
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.36e3
  • 4.36e3
  • 6.00e3
  • 6.04e3
  • 6.97e3
  • 7.34e3
  • 9.53e3
  • 9.62e3
  • 1.05e4
  • 1.35e4
  • 1.78e4
85.40
  • 85.40
  • 79.90
  • 79.78
  • 76.65
  • 75.43
  • 68.08
  • 67.78
  • 64.86
  • 54.76
  • 40.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.66e3
  • 4.66e3
84.42
  • 84.42
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
4.98e3
  • 4.98e3
  • 8.04e3
  • 8.54e3
  • 9.60e3
  • 9.96e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
  • 1.07e4
83.34
  • 83.34
  • 73.07
  • 71.42
  • 67.85
  • 66.65
  • 65.77
  • 64.69
  • 64.69
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
5.02e3
  • 5.02e3
  • 1.10e4
  • 1.23e4
  • 1.33e4
  • 1.44e4
83.19
  • 83.19
  • 63.00
  • 58.85
  • 55.37
  • 51.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.29
  • 82.29
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000026Segmentation:14-19 somites
5.98e3
  • 5.98e3
79.99
  • 79.99
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.39e3
  • 6.39e3
78.60
  • 78.60
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.64e3
  • 6.64e3
  • 7.47e3
77.77
  • 77.77
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.64e3
  • 6.64e3
  • 7.47e3
77.77
  • 77.77
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 1.36e4
75.00
  • 75.00
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
74.99
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
7.83e3
  • 7.83e3
  • 8.30e3
  • 8.30e3
  • 9.33e3
  • 1.16e4
73.79
  • 73.79
  • 72.21
  • 72.21
  • 68.74
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
8.40e3
  • 8.40e3
  • 8.54e3
  • 8.96e3
  • 9.19e3
  • 9.19e3
  • 9.60e3
  • 9.60e3
71.86
  • 71.86
  • 71.42
  • 69.99
  • 69.22
  • 69.22
  • 67.85
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.54e3
  • 8.54e3
  • 9.19e3
  • 9.19e3
71.42
  • 71.42
  • 69.22
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.65e3
  • 8.65e3
  • 8.65e3
  • 1.03e4
  • 1.03e4
71.04
  • 71.04
  • 71.04
  • 65.61
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.83e3
  • 8.83e3
  • 9.44e3
  • 9.51e3
  • 9.67e3
  • 1.07e4
  • 1.12e4
  • 1.12e4
70.44
  • 70.44
  • 68.40
  • 68.16
  • 67.63
  • 64.26
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.50e3
  • 9.50e3
  • 9.85e3
  • 1.34e4
68.18
  • 68.18
  • 67.03
  • 55.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.60e3
  • 9.60e3
  • 9.60e3
  • 1.08e4
  • 1.08e4
  • 1.08e4
67.85
  • 67.85
  • 67.85
  • 63.87
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
9.75e3
  • 9.75e3
  • 1.02e4
  • 1.07e4
  • 1.08e4
  • 1.13e4
  • 1.13e4
  • 1.21e4
  • 1.21e4
  • 1.22e4
  • 1.24e4
  • 1.25e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
67.34
  • 67.34
  • 65.96
  • 64.25
  • 63.88
  • 62.15
  • 62.04
  • 59.57
  • 59.35
  • 59.21
  • 58.54
  • 58.15
  • 57.90
  • 57.83
  • 57.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
67.27
  • 67.27
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.03e4
  • 1.12e4
66.65
  • 66.65
  • 66.65
  • 65.61
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.04e4
  • 1.04e4
  • 1.12e4
  • 1.12e4
  • 1.20e4
65.19
  • 65.19
  • 62.48
  • 62.48
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
  • 1.16e4
  • 1.20e4
64.99
  • 64.99
  • 61.10
  • 59.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.12e4
  • 1.14e4
  • 1.29e4
64.98
  • 64.98
  • 64.98
  • 62.47
  • 61.75
  • 56.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.75
  • 64.75
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
  • 1.09e4
  • 1.09e4
64.26
  • 64.26
  • 63.61
  • 63.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.08e4
  • 1.08e4
  • 1.08e4
  • 1.16e4
  • 1.18e4
63.87
  • 63.87
  • 63.87
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.09e4
  • 1.09e4
  • 1.32e4
  • 1.34e4
  • 1.36e4
63.61
  • 63.61
  • 55.97
  • 54.97
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
63.14
  • 63.14
  • 63.14
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.10e4
  • 1.10e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
63.14
  • 63.14
  • 60.70
  • 60.50
  • 59.98
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
  • 1.19e4
  • 1.19e4
62.49
  • 62.49
  • 59.99
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.42e4
  • 2.27e4
59.08
  • 59.08
  • 52.52
  • 23.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.41e4
  • 1.41e4
  • 1.66e4
  • 1.67e4
52.88
  • 52.88
  • 44.32
  • 44.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.35
  • 50.35
AEIR
  • AEIR
UBERON:2000072somite 1
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000073somite 5
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000728somite 2
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000732somite 3
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000733somite 7
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000857somite 4
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000982somite 6
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006859swim bladder bud
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.52e4
49.81
  • 49.81
  • 49.00
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.92
  • 47.92
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.95
  • 45.95
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.74e4
  • 1.74e4
  • 1.77e4
41.66
  • 41.66
  • 40.66
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.53
  • 41.53
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.84
  • 31.84
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.74
  • 24.74
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.41e4
  • 2.41e4
19.47
  • 19.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000070346 (hoxc8a)
ZFINZDB-GENE-990415-114 (hoxc8a)
EMBLBC080255, BC165923, BX005254, DQ060555, Y14544
Uniprot/SPTREMBLB2GTK2, B2GTK2_DANRE
Uniprot/SWISSPROTHXC8A_DANRE, Q68EH7

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