D. rerio Gene: hoxc10a - ENSDARG00000070348 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070348
Namehoxc10a
Descriptionhomeobox C10a [Source:ZFIN;Acc:ZDB-GENE-990415-110]
OrganismDanio rerio (zebrafish)
Synonym(s)hoxc10, z-81

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.84
  • 88.84
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.04e3
  • 4.04e3
86.48
  • 86.48
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.68e3
  • 5.68e3
  • 6.36e3
80.99
  • 80.99
  • 78.72
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.73
  • 80.73
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
6.26e3
  • 6.26e3
  • 7.30e3
  • 8.44e3
  • 8.68e3
  • 1.09e4
  • 1.10e4
  • 1.23e4
  • 1.39e4
  • 1.39e4
  • 1.50e4
79.03
  • 79.03
  • 75.56
  • 71.74
  • 70.95
  • 63.36
  • 63.31
  • 58.77
  • 53.41
  • 53.31
  • 49.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.71e3
  • 6.71e3
77.54
  • 77.54
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
76.67
  • 76.67
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.03e4
  • 1.03e4
  • 1.17e4
  • 1.43e4
65.44
  • 65.44
  • 60.68
  • 52.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.89
  • 58.89
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
1.33e4
  • 1.33e4
  • 1.36e4
  • 1.38e4
  • 1.46e4
  • 1.46e4
  • 1.47e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
  • 1.59e4
  • 1.61e4
  • 1.61e4
55.54
  • 55.54
  • 54.42
  • 53.70
  • 51.12
  • 51.03
  • 50.91
  • 50.90
  • 50.20
  • 49.92
  • 49.83
  • 46.72
  • 46.19
  • 46.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
  • 1.34e4
55.53
  • 55.53
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.35e4
  • 1.35e4
  • 1.75e4
54.82
  • 54.82
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.35e4
  • 1.35e4
54.63
  • 54.63
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.07
  • 51.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.00
  • 51.00
AEIR
  • AEIR
CL:0000402CNS interneuron
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.54e4
  • 1.54e4
48.44
  • 48.44
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.57e4
  • 1.57e4
47.54
  • 47.54
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.41
  • 46.41
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.69
  • 37.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000070348 (hoxc10a)
ZFINZDB-GENE-990415-110 (hoxc10a)
EMBLBX005254
Uniprot/SPTREMBLA2BE66, A2BE66_DANRE

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