D. rerio Gene: hoxc11a - ENSDARG00000070351 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070351
Namehoxc11a
Descriptionhomeobox C11a [Source:ZFIN;Acc:ZDB-GENE-990415-111]
OrganismDanio rerio (zebrafish)
Synonym(s)hoxc11, id:ibd3176, zgc:110834
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.09e3
  • 2.09e3
93.01
  • 93.01
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.36e3
  • 2.36e3
92.09
  • 92.09
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.48e3
  • 2.48e3
  • 4.54e3
91.71
  • 91.71
  • 84.81
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.59e3
  • 3.59e3
87.99
  • 87.99
AEIR
  • AEIR
UBERON:2000164ventral mesenchyme
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.17e4
  • 1.17e4
  • 1.19e4
  • 1.19e4
  • 1.19e4
75.00
  • 75.00
  • 75.00
  • 60.70
  • 60.70
  • 59.99
  • 59.99
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
71.80
  • 71.80
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.43e3
  • 9.43e3
68.44
  • 68.44
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.05e4
  • 1.09e4
  • 1.16e4
  • 1.16e4
  • 1.18e4
66.65
  • 66.65
  • 65.37
  • 64.99
  • 63.63
  • 61.09
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.43
  • 66.43
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.23e4
  • 1.24e4
  • 1.28e4
  • 1.30e4
  • 1.36e4
  • 1.45e4
  • 1.49e4
  • 1.49e4
62.39
  • 62.39
  • 60.33
  • 58.86
  • 58.40
  • 57.05
  • 56.63
  • 54.54
  • 51.59
  • 50.23
  • 50.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
1.14e4
  • 1.14e4
  • 1.40e4
  • 1.42e4
  • 1.46e4
  • 1.46e4
  • 1.47e4
  • 1.47e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
  • 1.50e4
  • 1.55e4
  • 1.58e4
  • 1.59e4
  • 1.60e4
61.75
  • 61.75
  • 53.06
  • 52.45
  • 51.25
  • 51.15
  • 50.94
  • 50.84
  • 50.53
  • 50.46
  • 50.14
  • 49.68
  • 48.18
  • 47.12
  • 46.60
  • 46.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.18e4
  • 1.18e4
  • 1.18e4
  • 1.45e4
  • 1.47e4
60.65
  • 60.65
  • 60.53
  • 51.51
  • 50.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.27e4
  • 1.27e4
57.34
  • 57.34
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.37e4
  • 1.44e4
55.15
  • 55.15
  • 54.01
  • 51.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.41e4
  • 1.41e4
  • 1.68e4
  • 1.69e4
52.69
  • 52.69
  • 43.69
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.52e4
  • 1.52e4
49.21
  • 49.21
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.96
  • 45.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.55
  • 44.55
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.23
  • 22.23
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.35e4
  • 2.35e4
21.20
  • 21.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000070351.

Cross-references

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