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D. rerio Gene: hoxc12a - ENSDARG00000070352 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070352
Namehoxc12a
Descriptionhomeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-81p22.1
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.87e3
  • 2.87e3
90.38
  • 90.38
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
5.16e3
  • 5.16e3
  • 5.20e3
  • 7.69e3
  • 7.71e3
  • 7.86e3
  • 1.31e4
  • 1.39e4
  • 1.54e4
  • 1.71e4
82.72
  • 82.72
  • 82.59
  • 74.24
  • 74.18
  • 73.69
  • 56.21
  • 53.36
  • 48.45
  • 42.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
80.86
  • 80.86
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.74e3
  • 8.74e3
  • 9.81e3
70.75
  • 70.75
  • 67.15
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.71e3
  • 9.71e3
  • 1.23e4
  • 1.37e4
67.48
  • 67.48
  • 58.91
  • 54.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.55
  • 63.55
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.11e4
  • 1.11e4
62.67
  • 62.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.76
  • 60.76
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.23e4
  • 1.23e4
58.87
  • 58.87
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
1.32e4
  • 1.32e4
  • 1.48e4
  • 1.49e4
  • 1.56e4
  • 1.66e4
  • 1.78e4
  • 1.80e4
  • 1.83e4
  • 1.83e4
55.72
  • 55.72
  • 50.39
  • 50.15
  • 47.79
  • 44.46
  • 40.38
  • 39.77
  • 38.72
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.40e4
  • 1.40e4
53.25
  • 53.25
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.51e4
  • 1.51e4
49.42
  • 49.42
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.63e4
  • 1.63e4
  • 1.69e4
45.48
  • 45.48
  • 43.42
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.21
  • 45.21
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000070352 (hoxc12a)
ZFINZDB-GENE-000822-6 (hoxc12a)
EMBLBC162849, BC162872, BX005254
Uniprot/SPTREMBLA2BE68, A2BE68_DANRE

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