D. rerio Gene: chac1 - ENSDARG00000070426 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070426
Namechac1
DescriptionChaC, cation transport regulator homolog 1 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-030131-1957]
OrganismDanio rerio (zebrafish)
Synonym(s)cb1014, mgc4504, wu:fb93a10, wu:fp64e03
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
237
  • 237
99.21
  • 99.21
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
246
  • 246
99.18
  • 99.18
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
262
  • 262
99.13
  • 99.13
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
264
  • 264
99.12
  • 99.12
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
283
  • 283
  • 916
  • 1.00e3
  • 3.08e3
  • 3.16e3
99.05
  • 99.05
  • 96.94
  • 96.65
  • 89.68
  • 89.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
291
  • 291
99.03
  • 99.03
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
304
  • 304
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
310
  • 310
  • 530
98.97
  • 98.97
  • 98.23
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
336
  • 336
  • 6.38e3
98.88
  • 98.88
  • 78.63
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
353
  • 353
  • 745
98.82
  • 98.82
  • 97.51
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
360
  • 360
  • 2.51e3
  • 8.31e3
98.80
  • 98.80
  • 91.60
  • 72.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
371
  • 371
  • 812
  • 1.19e3
  • 1.36e3
  • 1.37e3
  • 1.38e3
  • 1.53e3
  • 4.45e3
  • 4.54e3
  • 5.58e3
98.76
  • 98.76
  • 97.29
  • 96.03
  • 95.46
  • 95.40
  • 95.39
  • 94.87
  • 85.11
  • 84.79
  • 81.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
421
  • 421
98.59
  • 98.59
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
432
  • 432
98.56
  • 98.56
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
466
  • 466
98.44
  • 98.44
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
498
  • 498
  • 920
98.33
  • 98.33
  • 96.92
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
662
  • 662
  • 1.11e3
  • 1.72e3
  • 1.73e3
  • 1.17e4
97.79
  • 97.79
  • 96.29
  • 94.25
  • 94.20
  • 60.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
663
  • 663
  • 730
  • 898
  • 1.01e3
  • 1.04e3
  • 1.25e3
  • 1.41e3
  • 1.81e3
  • 3.26e3
  • 3.33e3
  • 3.35e3
  • 3.98e3
  • 4.21e3
  • 4.71e3
  • 6.13e3
  • 1.32e4
  • 1.35e4
  • 1.49e4
97.78
  • 97.78
  • 97.56
  • 97.00
  • 96.62
  • 96.51
  • 95.83
  • 95.28
  • 93.95
  • 89.08
  • 88.86
  • 88.78
  • 86.67
  • 85.91
  • 84.23
  • 79.49
  • 55.87
  • 54.83
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
673
  • 673
  • 882
  • 928
97.75
  • 97.75
  • 97.05
  • 96.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
682
  • 682
97.72
  • 97.72
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
732
  • 732
97.55
  • 97.55
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
884
  • 884
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
95.47
  • 95.47
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.40
  • 95.40
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.39e3
  • 1.39e3
95.36
  • 95.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.46e3
  • 1.46e3
  • 6.62e3
95.13
  • 95.13
  • 77.85
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.06e3
  • 2.06e3
93.12
  • 93.12
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
2.12e3
  • 2.12e3
  • 3.04e3
  • 3.28e3
  • 3.78e3
  • 4.37e3
  • 4.63e3
92.89
  • 92.89
  • 89.83
  • 89.01
  • 87.34
  • 85.37
  • 84.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.49e3
  • 3.49e3
88.31
  • 88.31
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.86e3
  • 3.86e3
87.09
  • 87.09
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.85e3
  • 4.85e3
83.77
  • 83.77
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.22e4
62.42
  • 62.42
  • 59.16
AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.21e4
61.75
  • 61.75
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.16e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.34e4
  • 1.41e4
61.09
  • 61.09
  • 60.50
  • 59.98
  • 58.31
  • 58.31
  • 54.97
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
60.86
  • 60.86
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.20e4
60.50
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
59.98
  • 59.98
  • 59.50
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.21e4
  • 1.21e4
  • 1.25e4
  • 1.25e4
  • 1.26e4
  • 1.26e4
59.50
  • 59.50
  • 58.31
  • 58.31
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
58.80
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000070426.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000070426.

Cross-references

EnsemblENSDARG00000070426 (chac1)
ZFINZDB-GENE-030131-1957 (chac1)
EMBLAL929049, BC139571, BC153392, BX897725
Uniprot/SPTREMBLA4QNY6, A4QNY6_DANRE
Uniprot/SWISSPROTCHAC1_DANRE, Q5SPB6

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