D. rerio Gene: vapb - ENSDARG00000070435 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070435
Namevapb
DescriptionVAMP (vesicle-associated membrane protein)-associated protein B and C [Source:ZFIN;Acc:ZDB-GENE-030131-2348]
OrganismDanio rerio (zebrafish)
Synonym(s)fc05d09, wu:fa96d05, wu:fc05d09, zgc:66045
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
1.07e3
  • 1.07e3
  • 2.27e3
  • 2.62e3
  • 3.11e3
  • 3.59e3
96.42
  • 96.42
  • 92.39
  • 91.23
  • 89.59
  • 87.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e3
  • 1.16e3
96.11
  • 96.11
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.29e3
  • 1.29e3
95.68
  • 95.68
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
95.29
  • 95.29
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
  • 2.30e3
94.60
  • 94.60
  • 92.29
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
94.44
  • 94.44
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.97
  • 93.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.07e3
  • 2.07e3
  • 2.38e3
93.06
  • 93.06
  • 92.04
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
92.75
  • 92.75
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.35e3
  • 2.35e3
92.14
  • 92.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.45e3
  • 2.45e3
  • 3.77e3
91.80
  • 91.80
  • 87.39
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.64
  • 91.64
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.37
  • 91.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.73
  • 90.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.84
  • 89.84
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.34e3
  • 3.34e3
88.82
  • 88.82
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
3.65e3
  • 3.65e3
  • 3.81e3
87.79
  • 87.79
  • 87.26
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.91
  • 86.91
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
3.99e3
  • 3.99e3
  • 4.78e3
86.63
  • 86.63
  • 84.00
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.23
  • 86.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.93e3
  • 4.93e3
83.51
  • 83.51
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.11e3
  • 5.11e3
82.89
  • 82.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.83e3
  • 6.83e3
77.13
  • 77.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000070435.

Cross-references

EnsemblENSDARG00000070435 (vapb)
ZFINZDB-GENE-030131-2348 (vapb)
EMBLBC064648, BC152200, BC155104, BX323459
Uniprot/SPTREMBLQ6P2B0, Q6P2B0_DANRE

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