D. rerio Gene: ARF5 - ENSDARG00000070472 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070472
NameARF5
Descriptionzgc:77650 [Source:ZFIN;Acc:ZDB-GENE-030131-6151]
OrganismDanio rerio (zebrafish)
Synonym(s)cb445, cb789, dkey-238c7.11, fi36f11, sb:cb445, wu:fa06c04, wu:fb16f02, wu:fi36f11
Orthologs(s)34 orthologs
Paralog(s)31 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
230
  • 230
  • 245
  • 333
  • 374
  • 389
99.23
  • 99.23
  • 99.18
  • 98.89
  • 98.75
  • 98.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
320
  • 320
  • 471
  • 541
  • 776
  • 903
  • 970
98.93
  • 98.93
  • 98.43
  • 98.19
  • 97.41
  • 96.98
  • 96.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
398
  • 398
98.67
  • 98.67
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
402
  • 402
98.66
  • 98.66
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
447
  • 447
  • 896
98.50
  • 98.50
  • 97.00
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
464
  • 464
98.45
  • 98.45
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
514
  • 514
  • 606
  • 639
  • 654
  • 680
  • 877
  • 914
  • 937
  • 1.04e3
  • 1.08e3
98.28
  • 98.28
  • 97.97
  • 97.86
  • 97.81
  • 97.73
  • 97.07
  • 96.94
  • 96.86
  • 96.52
  • 96.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
541
  • 541
98.19
  • 98.19
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
546
  • 546
  • 872
  • 884
  • 979
98.18
  • 98.18
  • 97.08
  • 97.04
  • 96.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
577
  • 577
98.07
  • 98.07
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0000068embryo stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • UBERON:0000109gastrula stage
587
  • 587
  • 729
  • 759
  • 839
  • 847
  • 945
  • 1.18e3
  • 1.24e3
  • 1.32e3
  • 1.36e3
  • 1.42e3
  • 1.54e3
  • 2.53e3
  • 2.55e3
  • 3.73e3
  • 4.48e3
  • 4.98e3
  • 6.17e3
  • 7.11e3
  • 7.91e3
  • 8.79e3
  • 1.21e4
  • 1.29e4
  • 1.45e4
  • 1.49e4
98.04
  • 98.04
  • 97.56
  • 97.46
  • 97.19
  • 97.17
  • 96.84
  • 96.05
  • 95.84
  • 95.58
  • 95.44
  • 95.26
  • 94.86
  • 91.54
  • 91.47
  • 87.50
  • 85.00
  • 83.33
  • 79.35
  • 76.19
  • 73.52
  • 70.57
  • 59.41
  • 56.79
  • 51.51
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
621
  • 621
97.93
  • 97.93
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
631
  • 631
97.89
  • 97.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
688
  • 688
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
712
  • 712
97.62
  • 97.62
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
741
  • 741
97.52
  • 97.52
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
756
  • 756
  • 1.02e3
  • 1.45e4
97.47
  • 97.47
  • 96.60
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
782
  • 782
  • 908
97.38
  • 97.38
  • 96.96
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
793
  • 793
97.35
  • 97.35
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
862
  • 862
97.12
  • 97.12
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
884
  • 884
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
  • 2.36e3
96.59
  • 96.59
  • 92.11
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.48
  • 96.48
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.38
  • 96.38
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.10e3
  • 1.10e3
  • 1.17e3
  • 1.37e3
96.33
  • 96.33
  • 96.09
  • 95.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.96
  • 95.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.53
  • 95.53
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
94.29
  • 94.29
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.85e3
  • 1.85e3
  • 1.35e4
93.80
  • 93.80
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.07
  • 92.07
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.42e3
  • 2.42e3
91.90
  • 91.90
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.67
  • 88.67
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
85.71
  • 85.71
  • 85.71
  • 85.71
  • 83.33
  • 74.99
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
4.78e3
  • 4.78e3
  • 8.15e3
  • 9.71e3
  • 1.02e4
83.99
  • 83.99
  • 72.71
  • 67.48
  • 65.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
8.71e3
  • 8.71e3
  • 1.26e4
  • 1.26e4
  • 1.36e4
  • 1.36e4
  • 1.36e4
70.82
  • 70.82
  • 57.68
  • 57.68
  • 54.53
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
61.09
  • 61.09
  • 61.09
  • 61.09
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.50e4
55.82
  • 55.82
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Cross-references

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