D. rerio Gene: hpcal4 - ENSDARG00000070491 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070491
Namehpcal4
Descriptionhippocalcin like 4 [Source:ZFIN;Acc:ZDB-GENE-060503-307]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-215a10.5
Orthologs(s)16 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.77
  • 94.77
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.75e3
  • 2.75e3
  • 9.18e3
90.81
  • 90.81
  • 69.27
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
7.33e3
  • 7.33e3
  • 1.07e4
  • 1.13e4
  • 1.67e4
  • 1.72e4
75.46
  • 75.46
  • 64.24
  • 62.22
  • 43.97
  • 42.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.81e3
  • 8.81e3
70.52
  • 70.52
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.61e3
  • 9.61e3
67.82
  • 67.82
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.97e3
  • 9.97e3
  • 1.73e4
66.62
  • 66.62
  • 42.20
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.14
  • 56.14
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.35
  • 54.35
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.52e4
  • 1.52e4
49.21
  • 49.21
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.99
  • 47.99
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.60e4
  • 1.60e4
46.32
  • 46.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.35
  • 44.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.81e4
  • 1.81e4
39.24
  • 39.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.82e4
  • 1.82e4
39.20
  • 39.20
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.07
  • 39.07
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.21
  • 34.21
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.30
  • 32.30
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
25.93
  • 25.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000070491.

Cross-references

EnsemblENSDARG00000070491 (hpcal4)
ZFINZDB-GENE-060503-307 (hpcal4)
EMBLBX510301
Uniprot/SPTREMBLA3KPW8, A3KPW8_DANRE

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