D. rerio Gene: pdgfra - ENSDARG00000070494 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070494
Namepdgfra
Descriptionplatelet-derived growth factor receptor, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-208]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309717.20, pdgfr-a, wu:fc27f02, wu:fv91b12
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:2000164ventral mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.49e3
  • 1.49e3
  • 1.49e3
  • 1.49e3
  • 4.27e3
  • 4.27e3
95.00
  • 95.00
  • 95.00
  • 95.00
  • 85.71
  • 85.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002192ventricular system choroidal fissure
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.87e3
  • 1.87e3
  • 1.87e3
  • 2.13e3
  • 2.13e3
  • 2.13e3
93.75
  • 93.75
  • 93.75
  • 92.86
  • 92.86
  • 92.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
2.99e3
  • 2.99e3
  • 3.98e3
  • 4.27e3
  • 4.48e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
90.00
  • 90.00
  • 86.66
  • 85.71
  • 85.00
  • 83.33
  • 83.33
  • 83.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.20e3
  • 3.20e3
  • 3.98e3
  • 3.98e3
  • 4.67e3
89.28
  • 89.28
  • 86.66
  • 86.66
  • 84.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
3.20e3
  • 3.20e3
  • 3.20e3
  • 3.73e3
  • 4.60e3
  • 4.98e3
  • 5.27e3
  • 6.54e3
89.28
  • 89.28
  • 89.28
  • 87.50
  • 84.61
  • 83.33
  • 82.35
  • 78.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.72e3
  • 3.72e3
87.54
  • 87.54
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.73e3
  • 3.73e3
  • 4.98e3
  • 7.47e3
  • 8.88e3
  • 1.12e4
87.50
  • 87.50
  • 83.34
  • 75.00
  • 70.28
  • 62.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.94
  • 86.94
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.93e3
  • 3.93e3
  • 4.48e3
86.84
  • 86.84
  • 84.99
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
4.15e3
  • 4.15e3
  • 4.72e3
86.11
  • 86.11
  • 84.20
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.69e3
  • 4.69e3
  • 6.30e3
84.28
  • 84.28
  • 78.90
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
4.80e3
  • 4.80e3
  • 4.92e3
  • 5.61e3
  • 5.61e3
  • 7.49e3
  • 7.79e3
  • 7.95e3
  • 9.75e3
  • 1.02e4
  • 1.13e4
83.92
  • 83.92
  • 83.54
  • 81.20
  • 81.20
  • 74.91
  • 73.91
  • 73.38
  • 67.36
  • 65.97
  • 62.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
  • 5.91e3
83.82
  • 83.82
  • 80.22
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.00e3
  • 5.00e3
  • 5.40e3
  • 7.20e3
83.26
  • 83.26
  • 81.93
  • 75.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
82.80
  • 82.80
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
5.23e3
  • 5.23e3
  • 5.23e3
  • 6.23e3
  • 7.21e3
  • 1.02e4
  • 1.06e4
  • 1.08e4
82.49
  • 82.49
  • 82.49
  • 79.15
  • 75.86
  • 65.89
  • 64.56
  • 63.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
6.27e3
  • 6.27e3
  • 6.38e3
  • 7.00e3
  • 7.25e3
  • 7.51e3
  • 7.84e3
  • 8.03e3
  • 8.49e3
  • 9.24e3
  • 9.52e3
  • 1.02e4
  • 1.08e4
  • 1.16e4
  • 1.17e4
  • 1.48e4
79.01
  • 79.01
  • 78.65
  • 76.57
  • 75.73
  • 74.84
  • 73.75
  • 73.13
  • 71.57
  • 69.08
  • 68.12
  • 65.91
  • 63.70
  • 61.03
  • 60.93
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000026Segmentation:14-19 somites
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0003099cranial neural crest
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 1.19e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 60.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.10e4
  • 1.12e4
74.99
  • 74.99
  • 66.65
  • 63.32
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.74e3
  • 7.74e3
74.09
  • 74.09
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
74.02
  • 74.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.83e3
  • 7.83e3
73.79
  • 73.79
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
  • 1.65e4
73.26
  • 73.26
  • 44.61
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
8.39e3
  • 8.39e3
  • 1.07e4
  • 1.09e4
71.90
  • 71.90
  • 64.26
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.60e3
  • 8.60e3
71.20
  • 71.20
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.79e3
  • 8.79e3
  • 9.96e3
  • 9.96e3
  • 1.07e4
70.57
  • 70.57
  • 66.65
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.43e3
  • 9.43e3
68.42
  • 68.42
AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.19e4
66.67
  • 66.67
  • 62.50
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.03e4
  • 1.03e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
  • 1.07e4
  • 1.07e4
65.37
  • 65.37
  • 64.69
  • 64.27
  • 64.27
  • 64.27
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.76
  • 64.76
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 1.20e4
  • 1.22e4
  • 1.65e4
64.65
  • 64.65
  • 59.67
  • 59.19
  • 44.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.06e4
  • 1.06e4
  • 1.17e4
  • 1.18e4
  • 1.36e4
  • 1.53e4
64.65
  • 64.65
  • 60.98
  • 60.35
  • 54.47
  • 48.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.90
  • 62.90
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.77
  • 62.77
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.23e4
  • 1.23e4
58.94
  • 58.94
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.84
  • 55.84
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:0003849mesencephalic neural crest
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011362cranial blood vasculature
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002201vasculature of trunk
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
1.49e4
  • 1.49e4
  • 1.66e4
  • 1.67e4
  • 1.67e4
49.98
  • 49.98
  • 44.32
  • 44.20
  • 44.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.77
  • 47.77
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.80
  • 44.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000070494 (pdgfra)
ZFINZDB-GENE-990415-208 (pdgfra)
EMBLCU458757
Uniprot/SPTREMBLA4JYD9, A4JYD9_DANRE, F1QNY7, F1QNY7_DANRE

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