D. rerio Gene: trpc4a - ENSDARG00000070507 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070507
Nametrpc4a
Descriptiontransient receptor potential cation channel, subfamily C, member 4a [Source:ZFIN;Acc:ZDB-GENE-131217-1]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-109i21.3, trpc4b
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.51e3
  • 9.51e3
68.17
  • 68.17
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 9.96e3
66.67
  • 66.67
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.85
  • 58.85
AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
  • 1.49e4
  • 1.49e4
56.24
  • 56.24
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.93
  • 55.93
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
  • 1.49e4
  • 1.49e4
54.15
  • 54.15
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001701glossopharyngeal ganglion
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005362vagus X ganglion
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009127epibranchial ganglion
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.91e4
48.36
  • 48.36
  • 36.09
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.61e4
  • 1.61e4
  • 1.75e4
46.02
  • 46.02
  • 41.41
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.62e4
  • 1.62e4
  • 1.63e4
  • 1.70e4
  • 1.72e4
  • 1.73e4
45.68
  • 45.68
  • 45.51
  • 42.93
  • 42.38
  • 41.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.20
  • 29.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
27.88
  • 27.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Chordata9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000070507.

Cross-references

EnsemblENSDARG00000070507 (trpc4a)
ZFINZDB-GENE-131217-1 (trpc4a)
EMBLBX511008
Uniprot/SPTREMBLE7FGL3, E7FGL3_DANRE

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