D. rerio Gene: vhl - ENSDARG00000070617 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070617
Namevhl
Descriptionvon Hippel-Lindau tumor suppressor [Source:ZFIN;Acc:ZDB-GENE-070112-1042]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:158722
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
1.54e3
  • 1.54e3
  • 6.54e3
  • 1.50e4
94.85
  • 94.85
  • 78.12
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.95
  • 85.95
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.17e3
  • 5.17e3
  • 9.82e3
82.69
  • 82.69
  • 67.11
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.75
  • 80.75
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.45
  • 79.45
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.06
  • 78.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.86
  • 77.86
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.64e3
  • 6.64e3
  • 1.49e4
77.75
  • 77.75
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.76e3
  • 6.76e3
  • 7.10e3
77.38
  • 77.38
  • 76.24
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.81e3
  • 6.81e3
77.21
  • 77.21
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
76.03
  • 76.03
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.35e3
  • 7.35e3
75.38
  • 75.38
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
7.76e3
  • 7.76e3
  • 9.01e3
74.00
  • 74.00
  • 69.82
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.89e3
  • 7.89e3
73.59
  • 73.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
71.82
  • 71.82
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.51e3
  • 8.51e3
71.51
  • 71.51
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
8.74e3
  • 8.74e3
  • 1.02e4
  • 1.06e4
  • 1.14e4
  • 1.31e4
70.73
  • 70.73
  • 65.72
  • 64.35
  • 61.92
  • 56.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.74e3
  • 8.74e3
70.72
  • 70.72
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.52
  • 70.52
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.98e3
  • 8.98e3
69.94
  • 69.94
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.00e3
  • 9.00e3
  • 1.01e4
69.85
  • 69.85
  • 66.16
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.69e3
  • 9.69e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.03e4
  • 1.03e4
65.63
  • 65.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.04e4
  • 1.04e4
  • 1.20e4
65.12
  • 65.12
  • 59.93
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.38
  • 62.38
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.24e4
  • 1.24e4
  • 1.37e4
58.33
  • 58.33
  • 54.15
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.49e4
57.12
  • 57.12
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.18
  • 43.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000070617 (vhl)
ZFINZDB-GENE-070112-1042 (vhl)
EMBLBX936393
Uniprot/SPTREMBLF1QY17, F1QY17_DANRE

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