D. rerio Gene: fam3a - ENSDARG00000070675 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070675
Namefam3a
Descriptionfamily with sequence similarity 3, member A [Source:ZFIN;Acc:ZDB-GENE-040426-1772]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:73350
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.77e3
  • 1.77e3
  • 2.17e3
  • 2.45e3
  • 2.68e3
  • 2.75e3
  • 4.05e3
94.08
  • 94.08
  • 92.74
  • 91.79
  • 91.04
  • 90.80
  • 86.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
  • 2.69e3
  • 2.80e3
  • 3.22e3
  • 3.52e3
  • 4.98e3
  • 5.04e3
  • 6.23e3
  • 6.27e3
  • 6.40e3
  • 6.52e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.91e3
  • 6.97e3
  • 7.03e3
  • 7.06e3
  • 7.15e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.08e3
  • 8.96e3
  • 8.96e3
  • 1.39e4
  • 1.47e4
91.74
  • 91.74
  • 90.99
  • 90.61
  • 89.22
  • 88.20
  • 83.33
  • 83.12
  • 79.15
  • 79.01
  • 78.57
  • 78.16
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.86
  • 76.66
  • 76.46
  • 76.36
  • 76.07
  • 74.99
  • 74.99
  • 73.52
  • 72.96
  • 69.99
  • 69.99
  • 53.44
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.10
  • 91.10
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
3.12e3
  • 3.12e3
  • 3.54e3
  • 6.04e3
  • 8.62e3
  • 8.72e3
89.55
  • 89.55
  • 88.14
  • 79.78
  • 71.15
  • 70.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.39e3
  • 3.39e3
  • 5.26e3
88.64
  • 88.64
  • 82.37
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.53e3
  • 3.53e3
88.17
  • 88.17
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
3.71e3
  • 3.71e3
  • 3.91e3
  • 4.08e3
  • 4.29e3
  • 4.62e3
  • 4.64e3
  • 4.70e3
  • 5.03e3
  • 5.09e3
  • 5.28e3
87.58
  • 87.58
  • 86.90
  • 86.32
  • 85.63
  • 84.53
  • 84.47
  • 84.26
  • 83.16
  • 82.96
  • 82.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
87.35
  • 87.35
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.81
  • 86.81
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.11e3
  • 4.11e3
  • 1.50e4
86.24
  • 86.24
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
  • 6.65e3
85.79
  • 85.79
  • 77.75
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.39e3
  • 4.39e3
85.30
  • 85.30
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.47e3
  • 4.47e3
85.03
  • 85.03
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.50e3
  • 4.50e3
84.94
  • 84.94
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
84.76
  • 84.76
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
  • 5.46e3
83.85
  • 83.85
  • 81.73
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
  • 5.30e3
83.52
  • 83.52
  • 82.25
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.93e3
  • 4.93e3
83.51
  • 83.51
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.07
  • 83.07
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
83.00
  • 83.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.18e3
  • 5.18e3
82.67
  • 82.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.63
  • 82.63
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.51e3
  • 5.51e3
81.54
  • 81.54
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
5.58e3
  • 5.58e3
  • 5.74e3
  • 5.78e3
  • 5.91e3
81.30
  • 81.30
  • 80.78
  • 80.66
  • 80.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.59e3
  • 5.59e3
81.29
  • 81.29
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.59e3
  • 5.59e3
81.28
  • 81.28
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.19e3
  • 6.19e3
79.27
  • 79.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.12
  • 79.12
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
6.53e3
  • 6.53e3
  • 7.45e3
  • 8.01e3
78.15
  • 78.15
  • 75.07
  • 73.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.16
  • 76.16
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.15e3
  • 7.15e3
76.07
  • 76.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.56
  • 71.56
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000070675.

Cross-references

EnsemblENSDARG00000070675 (fam3a)
ZFINZDB-GENE-040426-1772 (fam3a)
EMBLBC059665, CR847803
Uniprot/SPTREMBLQ6PBL5, Q6PBL5_DANRE

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