Gene: RNF223 (1 to many) - ENSDARG00000070697 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000070697
Name	RNF223 (1 to many)
Description	ring finger protein 223 [Source:HGNC Symbol;Acc:HGNC:40020]
Organism	Danio rerio (zebrafish)
Orthologs(s)	10 orthologs
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.56e4 1.56e4	47.72 47.72	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.71e4 1.71e4	42.62 42.62	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.80 40.80	AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage ZFS:0000037Larval:Day 5	1.87e4 1.87e4 1.99e4 2.17e4 2.61e4	37.32 37.32 33.50 27.51 12.56	AEIR AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.24e4 2.24e4	25.09 25.09	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.27e4 2.27e4	24.03 24.03	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.35e4 2.35e4	21.26 21.26	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	10 species Homo sapiens (human) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Bos taurus (cattle) Equus caballus (horse) Canis lupus familiaris (dog) Cavia porcellus (guinea pig) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	10 genes ENSG00000237330 RNF223 ENSGGOG00000026082 RNF223 ENSMMUG00000032293 RNF223 ENSBTAG00000046758 RNF223 ENSECAG00000022747 RNF223 ENSCAFG00000023177 RNF223 ENSCPOG00000020983 RNF223 ENSGALG00000023906 RNF223 ENSACAG00000011618 RNF223 ENSXETG00000031925 RNF223	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000070697.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Euteleostomi	1 gene ENSDARG00000098411 RNF223 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000070697.

Cross-references

Ensembl	ENSDARG00000070697 (RNF223 (1 to many))
HGNC	HGNC:40020 (RNF223 (1 to many))
Uniprot/SPTREMBL	F1QMY8, F1QMY8_DANRE