D. rerio Gene: chrna4b - ENSDARG00000070724 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000070724
Namechrna4b
Descriptioncholinergic receptor, nicotinic, alpha 4b [Source:ZFIN;Acc:ZDB-GENE-090505-3]
OrganismDanio rerio (zebrafish)
Synonym(s)chrna4, loc556619gn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003114pharyngeal arch 3
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0005523rhombomere 7
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.39e4
  • 1.49e4
57.11
  • 57.11
  • 54.97
  • 53.55
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
1.29e4
  • 1.29e4
  • 1.34e4
  • 1.34e4
  • 1.49e4
56.65
  • 56.65
  • 54.99
  • 54.97
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 2.04e4
56.26
  • 56.26
  • 31.75
AEIR
  • AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0003066pharyngeal arch 2
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004362pharyngeal arch 1
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005519rhombomere 6
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.22
  • 46.22
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
1.73e4
  • 1.73e4
  • 1.83e4
  • 2.02e4
  • 2.06e4
  • 2.11e4
42.02
  • 42.02
  • 38.60
  • 32.34
  • 30.92
  • 29.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.78e4
  • 1.78e4
  • 1.92e4
40.56
  • 40.56
  • 35.55
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.42
  • 32.42
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.51e4
  • 2.51e4
16.08
  • 16.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000070724 (chrna4b)
ZFINZDB-GENE-090505-3 (chrna4b)
EMBLBC171545, BX511174, CR762408, DQ822508
Uniprot/SPTREMBLQ0PJT8, Q0PJT8_DANRE

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