Gene: gabra5 - ENSDARG00000070730 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000070730
Name	gabra5
Description	gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-93p24.1
Orthologs(s)	18 orthologs
Paralog(s)	5 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	2.20e3 2.20e3	92.63 92.63	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.58e3 2.58e3	91.35 91.35	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	6.87e3 6.87e3 9.49e3	77.00 77.00 68.22	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage UBERON:0004707pharyngula stage	8.21e3 8.21e3 1.06e4 1.67e4 1.68e4 1.77e4	72.51 72.51 64.67 44.22 43.62 40.71	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	9.61e3 9.61e3 1.34e4	67.82 67.82 55.29	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.27e4 1.27e4	57.46 57.46	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.72e4 1.72e4	42.57 42.57	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.72e4 1.72e4	42.39 42.39	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.62e4 2.62e4	12.15 12.15	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000186297 GABRA5 ENSMUSG00000055078 Gabra5 ENSPTRG00000006832 GABRA5 ENSMMUG00000023554 GABRA5 ENSRNOG00000010803 Gabra5 ENSBTAG00000003392 GABRA5 ENSSSCG00000004827 GABRA5 ENSECAG00000005559 GABRA5 ENSOCUG00000012905 GABRA5 ENSCAFG00000010035 GABRA5 ENSFCAG00000011946 GABRA5 ENSCPOG00000004165 GABRA5 ENSEEUG00000011807 GABRA5 ENSMODG00000000840 GABRA5 ENSOANG00000009524 GABRA5 ENSGALG00000016744 GABRA5 ENSACAG00000011363 GABRA5 ENSXETG00000027302 gabra5	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000070730.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	5 genes ENSDARG00000034011 GABRA2 (1 to many) ENSDARG00000058736 gabra6b ENSDARG00000068989 gabra1 ENSDARG00000075058 gabra6a ENSDARG00000091459 GABRA2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000070730.

Cross-references

Ensembl	ENSDARG00000070730 (gabra5)
ZFIN	ZDB-GENE-081104-30 (gabra5)
EMBL	CR405707
Uniprot/SPTREMBL	E9QE70, E9QE70_DANRE, F1QZ29, F1QZ29_DANRE